User:Egon Willighagen

Babel user information
nl-N Deze gebruiker heeft het Nederlands als moedertaal. en-5 This user has professional knowledge of English. de-2 Dieser Benutzer beherrscht Deutsch auf fortgeschrittenem Niveau. sv-1 Den här användaren har grundläggande kunskaper i svenska. This user is a member of WikiProject Chemistry. This user is a member of WikiProject COVID19.
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Scholia

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in the category
Impact

Open Scientist, very much involved in the Blue Obelisk (Q4420286)  movement, Egon Willighagen (Q20895241)  in the Wikidata database. Co-submitter of the Enabling Open Science: Wikidata for Research (Wiki4R) (Q26707522) . Also contributed to the Scholia project. Participating in Wikidata since July 2013. Seven years later, on September 19th 2020, I made my 1 millionth edit and in November 2021 the 2 millionth edit was made. April 8th 2023 I made the 3 millionth edit around the topic of per- and polyfluoroalkyl substances (Q648037) .

Chemistry has my main interest, metabolites particularly, but I am interested in science at large, including the process.

Things I am doing or interested in in Wikidata right now include:

• Wikidata:WikiProject_Source_MetaData/Citation_Typing_Ontology
• Scholia (Q45340488)  (particularly topic, citation links)
• contribute to Wikidata:WikiProject Chemistry and Wikidata:WikiProject COVID-19
• get the history of highly cited (cheminformatics) literature into Wikidata, including citation networks
• working with PubChem (Q278487) on depositing chemical structures in Wikidata in PubChem
• working with Cambridge Crystallographic Data Centre (Q5025404) on their identifiers in Wikidata and a small data deposit

Events

• SWAT4HCLS 2023 (Q116458604)  Hackathon, 16 February 2023
• LD4-Wikidata Group Call: Wikidata Queries around the SARS-CoV-2 virus and pandemic, 10th January 2023
• BioHackathon Europe 2022 (Q112064986) 
• Wikidata 10th Birthday in Utrecht, the Netherlands
• BioHackathon Europe 2021 (Q109379355) , hacked on KNCV Van Marumpenning (Q110544180)  and WikiProject_Elixir
• 13th International SWAT4HCLS conference (Q110499790) 
• VOGIN, 2021
• WikidataCon, 2019, Berlin, Germany: Cheminformatics to improve Wikidata on chemical compounds
  • Session
  • Working table
• 11th International SWAT4HCLS conference (Q56236021) , 2018 December 3-6, Antwerp, Belgium
• WikiProject Wikidata for Research Meetup, 2018 June 17-19, Berlin, Germany
• 11th International Conference on Chemical Structures (Q47501229) , 2018 May 27-31, Noordwijkerhout, The Netherlands (abstract, poster)
• Festival van Talent, 2018 March 24, Eindhoven, The Netherlands
• Open Science: the National Plan and you, 2017 May 29, Delft, The Netherlands

Proposals

• Discussion about KEGG identifiers

Accepted Properties

• CSD Refcode (P11375) (proposal)
• CXSMILES (P10718) (proposal)
• OpenAlex ID (P10283) (proposal)
• NMRShiftDB structure ID (P9405) (proposal)
• SwissLipids ID (P8691) (proposal, constraint violations)
• Linked Open Data Cloud ID (P8605) (proposal)
• MassBank accession ID (P6689) (proposal)
• SPLASH (P4964) (proposal)
• MetaboLights Compound ID (P3890) (proposal)
• CORDIS Project ID (P3400) (proposal)
• DSSTox substance ID (P3117) (proposal)
• PubChem Substance ID (SID) (P2153) (proposal)
• WikiPathways ID (P2410) (proposal)

Curation lists

• Polymers without an CXSMILES
• LIPID MAPS identifiers
• CAS numbers
• Shape Expressions I started (all ShEx)
• PubChem Deposits

Bots

User:UreomiczBot

I have started developing a bot to working on metabolic pathways related information.

User:Ureomics and User:UreomicsBot

Based on a request, I have created a third account, again ending with "bot". These two accounts are defunct.

Finished/Retired/Paused tasks

• make sure all metabolites in WikiPathways (Q7999828) are found in Wikidata
• adding LIPID MAPS ID (P2063) identifiers based on InChIKey match
• adding SwissLipids ID (P8691) identifiers based on InChIKey match
• Compounds with (canonical SMILES) that can have a CXSMILES
• EurJOC journal article that were published under a different journal name
• JCIM journal article that were published under a different journal name (See also Scholia and this list of most cited, misclassified JCICS article)
• added the JRC representative nanomaterial (Q47461491)  and literature that discusses them
• adding compounds (neutral, full stereochemistry) from PubChemLite tier0 and tier1 (Q75998504) 
• adding compounds that may be interesting to be explored as Zika drug leads
• porting pKa (P1117) data from the DrugMet database (finished)
• adding DSSTox substance ID (P3117) identifiers using QuickStatements (Q20084080)  commands created with Bioclipse (Q1769726)  from CC0 (Q6938433)  data on Figshare (Q17013516)  (finished)
• make sure all human metabolites in the RECON model (see Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2 (Q28487717) ) are found in Wikidata
• adding CAS Registry Number (P231) in a local data set to define the chemical identity it captures
• curation of PubChem IDs
• get mass spectra linked to using CCZero InChIKey-SPLASH data
• Wikidata:Wiki-wetenschappers