Wikidata:Property proposal/Structural Classification of Proteins ID
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Structural Classification of Proteins ID[edit]
Originally proposed at Wikidata:Property proposal/Natural science
Not done
| Description | ID for protein domains in SCOP database, and also Superfamily database |
|---|---|
| Represents | Structural Classification Of Proteins (Q4832556) |
| Data type | External identifier |
| Template parameter | SCOP at en:Template:Pfam box |
| Domain | protein domain |
| Allowed values | (please clarify) |
| Example | bromodomain (Q1829843) → 1b91 |
| Formatter URL | http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?tlev=fa;&pdb=$1 or http://supfam.org/SUPERFAMILY/cgi-bin/search.cgi?search_field=$1 |
| Robot and gadget jobs | Yes |
- Motivation
(Add your motivation for this property here.) GZWDer (talk) 08:19, 17 January 2017 (UTC)
- Discussion
I support this proposal, however several things need to be changed. The example "1b91" is a PDB ID for a particular protein with a bromodomain, not the SCOP ID for bromodomains. It looks like the SCOP for the bromodomain superfamily is a.29.2. The formatter URL should be changed to this. Furthermore, the superfamily database has a separate ID for bromodomain SSF47370, and so should be a separate property. What will be the source for these? I'd suggest the xrefs from interpro. Gstupp (talk) 19:55, 29 January 2017 (UTC)
- Agreeing with the comment about the example. Can that be resolved please? --Egon Willighagen (talk) 09:45, 14 April 2017 (UTC)
Notified participants of WikiProject Medicine What do we want to do about this property? ChristianKl (talk) 14:48, 10 November 2017 (UTC)- @GZWDer: Please make the example link and repair formatter URL.Thank you David (talk) 16:14, 16 November 2017 (UTC)
- @GZWDer, Gstupp, Egon Willighagen, ديفيد عادل وهبة خليل 2: Not done, given that there seems to be no interest in the property. If anybody is interested feel free to reopen. ChristianKl (✉) 22:16, 12 December 2017 (UTC)
