Wikidata:Property proposal/CIViC variant ID
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CIViC variant ID[edit]
Originally proposed at Wikidata:Property proposal/Natural science
| Description | Identifier used in the CIViC database (Q27612411) to identify specific variant |
|---|---|
| Data type | External identifier |
| Domain | sequence variant (Q15304597) |
| Example | BRAF V600E (Q21851559) → 12 |
| Source | CIViC db |
| Planned use | To represent cancer sequence variants in WikiData, by adding selected variant properties from the CIViC database. |
| Formatter URL | https://civic.genome.wustl.edu/links/variants/$1 |
| Robot and gadget jobs | The regular updates from CIViC will be done by a bot. |
- Motivation
Variants underlie differences in our susceptibility to disease, traits and drug responses. We would like to add knowledge on cancer variants to wikidata. The CIViC database is a prime source for cancer variants. We plan to use this information to link genes, diseases and drugs already captured in Wikidata. --Andrawaag (talk) 16:02, 27 October 2016 (UTC)
WikiProject Molecular biology has more than 50 participants and couldn't be pinged. Please post on the WikiProject's talk page instead.
Support Civic is emerging as a leading, open database in the cancer domain. It will be valuable to connect to it from Wikidata and vice versa. --I9606 (talk) 16:46, 28 October 2016 (UTC)
- Discussion
- Support --Tobias1984 (talk) 17:00, 28 October 2016 (UTC)
- Support But I would additionally welcome a value pattern and a URL formatter. --Egon Willighagen (talk) 17:53, 28 October 2016 (UTC)
- Support Great for shedding light in the complex cancer variants. -- Emitraka (talk) 13:02, 31 October 2016 (UTC)
- Support Useful for connections both ways. -- K krysiak (talk) 15:34, 1 November 2016 (UTC)
- Support. YULdigitalpreservation (talk) 16:05, 2 November 2016 (UTC)
- Comment: Combining the example value given, with the formatter URL, results in https://civic.genome.wustl.edu/links/variants/12 - this redirects to https://civic.genome.wustl.edu/#/events/genes/5/summary/variants/12/summary Andy Mabbett (Pigsonthewing); Talk to Andy; Andy's edits 19:44, 2 November 2016 (UTC)
- @I9606, Tobias1984, Andrawaag, Pigsonthewing, YULdigitalpreservation, K krysiak:
Done ChristianKl (talk) 18:33, 6 November 2016 (UTC)
