The PRIDE database and related tools and resources in 2019: improving support for quantification data (Q58611633)

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1 May 2020

title

The PRIDE database and related tools and resources in 2019: improving support for quantification data (English)

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author name string

Attila Csordas

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Jingwen Bai

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Avinash Inuganti

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Martin Eisenacher

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Enrique Pérez

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Timo Sachsenberg

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Jürgen Cox

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language of work or name

English

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publication date

1 January 2019

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published in

Nucleic Acids Research

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volume

47

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page(s)

D442-D450

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issue

D1

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Creative Commons Attribution 4.0 International

1 May 2020

copyright license

start time

5 November 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

12 December 2020

Open source system for analyzing, validating, and storing protein identification data

1 reference

12 December 2020

PRIDE: the proteomics identifications database

1 reference

12 December 2020

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

1 reference

12 December 2020

PASSEL: the PeptideAtlas SRMexperiment library

1 reference

12 December 2020

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

1 reference

12 December 2020

How to submit MS proteomics data to ProteomeXchange via the PRIDE database

1 reference

12 December 2020

ArrayExpress update--simplifying data submissions

1 reference

12 December 2020

Open source libraries and frameworks for biological data visualisation: a guide for developers

1 reference

12 December 2020

The CPTAC Data Portal: A Resource for Cancer Proteomics Research

1 reference

12 December 2020

Introducing the PRIDE Archive RESTful web services

1 reference

12 December 2020

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

1 reference

12 December 2020

PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface

1 reference

12 December 2020

Exploring the potential of public proteomics data

1 reference

12 December 2020

2016 update of the PRIDE database and its related tools

1 reference

12 December 2020

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

1 reference

12 December 2020

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

1 reference

12 December 2020

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

1 reference

12 December 2020

In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.

1 reference

12 December 2020

Identifying ELIXIR Core Data Resources

1 reference

12 December 2020

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

1 reference

12 December 2020

UniProt: the universal protein knowledgebase

1 reference

12 December 2020

jPOSTrepo: an international standard data repository for proteomes

1 reference

12 December 2020

Open Targets: a platform for therapeutic target identification and validation

1 reference

12 December 2020

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

1 reference

12 December 2020

A Golden Age for Working with Public Proteomics Data

1 reference

12 December 2020

BioContainers: An open-source and community-driven framework for software standardization

1 reference

12 December 2020

Discovering and linking public omics data sets using the Omics Discovery Index.

1 reference

12 December 2020

OpenMS - A platform for reproducible analysis of mass spectrometry data.

1 reference

12 December 2020

OLS Client and OLS Dialog: Open source tools to annotate public omics datasets.

1 reference

12 December 2020

Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates

1 reference

12 December 2020

Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes

1 reference

12 December 2020

The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

1 reference

12 December 2020

1 reference

12 December 2020

1 reference

12 December 2020

Expression Atlas: gene and protein expression across multiple studies and organisms.

1 reference

12 December 2020

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

1 reference

12 December 2020

Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline

1 reference

12 December 2020

Future Prospects of Spectral Clustering Approaches in Proteomics

1 reference

12 December 2020

Bioconda: sustainable and comprehensive software distribution for the life sciences

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKY1106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/Perez-RiverolCB19

1 May 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

1 reference