The PRIDE database and related tools and resources in 2019: improving support for quantification data (Q58611633)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

title

The PRIDE database and related tools and resources in 2019: improving support for quantification data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Johannes Griss

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Gerhard Mayer

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Julian Uszkoreit

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Enrique Audain

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Andrew F Jarnuczak

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Alvis Brazma

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Juan Antonio Vizcaíno

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Manuel Bernal-Llinares

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Suresh Hewapathirana

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Deepti J Kundu

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Mathias Walzer

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

10

Martin Eisenacher

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

author name string

Attila Csordas

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Jingwen Bai

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Avinash Inuganti

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Enrique Pérez

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Julianus Pfeuffer

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Timo Sachsenberg

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Sule Yilmaz

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Shivani Tiwary

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Jürgen Cox

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Tobias Ternent

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

publication date

1 January 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

language of work or name

English

0 references

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

volume

47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

issue

D1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

page(s)

D442-D450

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

1 May 2020

copyright license

start time

5 November 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

12 December 2020

Open source system for analyzing, validating, and storing protein identification data

1 reference

12 December 2020

PRIDE: the proteomics identifications database

1 reference

12 December 2020

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

1 reference

12 December 2020

PASSEL: The PeptideAtlas SRMexperiment library

1 reference

12 December 2020

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

1 reference

12 December 2020

How to submit MS proteomics data to ProteomeXchange via the PRIDE database

1 reference

12 December 2020

ArrayExpress update--simplifying data submissions

1 reference

12 December 2020

Open source libraries and frameworks for biological data visualisation: a guide for developers

1 reference

12 December 2020

The CPTAC Data Portal: A Resource for Cancer Proteomics Research

1 reference

12 December 2020

Introducing the PRIDE Archive RESTful web services

1 reference

12 December 2020

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

1 reference

12 December 2020

PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface

1 reference

12 December 2020

Exploring the potential of public proteomics data

1 reference

12 December 2020

2016 update of the PRIDE database and its related tools

1 reference

12 December 2020

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

1 reference

12 December 2020

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

1 reference

12 December 2020

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

1 reference

12 December 2020

In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.

1 reference

12 December 2020

Identifying ELIXIR Core Data Resources

1 reference

12 December 2020

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

1 reference

12 December 2020

UniProt: the universal protein knowledgebase

1 reference

12 December 2020

jPOSTrepo: an international standard data repository for proteomes

1 reference

12 December 2020

Open Targets: a platform for therapeutic target identification and validation

1 reference

12 December 2020

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

1 reference

12 December 2020

A Golden Age for Working with Public Proteomics Data

1 reference

12 December 2020

BioContainers: An open-source and community-driven framework for software standardization

1 reference

12 December 2020

Discovering and linking public omics data sets using the Omics Discovery Index.

1 reference

12 December 2020

OpenMS - A platform for reproducible analysis of mass spectrometry data.

1 reference

12 December 2020

OLS Client and OLS Dialog: Open source tools to annotate public omics datasets.

1 reference

12 December 2020

Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates

1 reference

12 December 2020

Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes

1 reference

12 December 2020

The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

1 reference

12 December 2020

1 reference

12 December 2020

1 reference

12 December 2020

Expression Atlas: gene and protein expression across multiple studies and organisms.

1 reference

12 December 2020

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

1 reference

12 December 2020

Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline

1 reference

12 December 2020

Future Prospects of Spectral Clustering Approaches in Proteomics

1 reference

12 December 2020

Bioconda: sustainable and comprehensive software distribution for the life sciences

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKY1106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/Perez-RiverolCB19

1 May 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

PubMed publication ID

30395289

1 reference