Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes (Q41519757)

2 October 2017

Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes (English)

1 reference

2 October 2017

Christoph N Schlaffner

object named as

Christoph N Schlaffner

1

0 references

Jyoti Choudhary

object named as

Jyoti S Choudhary

4

0 references

author name string

Georg J Pirklbauer

2

1 reference

PMCID

5571441

2 October 2017

Andreas Bender

3

1 reference

2 October 2017

1 August 2017

1 reference

2 October 2017

1 reference

2 October 2017

5

1 reference

2 October 2017

2

1 reference

2 October 2017

152-156.e4

1 reference

PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

ACTG: novel peptide mapping onto gene models.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Mass-spectrometric exploration of proteome structure and function

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Functional characterization of somatic mutations in cancer using network-based inference of protein activity

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Proteogenomics connects somatic mutations to signalling in breast cancer

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

PGx: Putting Peptides to BED

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Mass-spectrometry-based draft of the human proteome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

A draft map of the human proteome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Tools to covisualize and coanalyze proteomic data with genomes and transcriptomes: validation of genes and alternative mRNA splicing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

iPiG: integrating peptide spectrum matches into genome browser visualizations

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

The proteogenomic mapping tool

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

Dalliance: interactive genome viewing on the web.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

BigWig and BigBed: enabling browsing of large distributed datasets

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

6 June 2018

The PeptideAtlas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

The human genome browser at UCSC

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5571441

PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes.

6 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28837811

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/J.CELS.2017.07.007

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ylacbkl75bgojjhw6tmsigf3zu

30 July 2022

release_ylacbkl75bgojjhw6tmsigf3zu

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ylacbkl75bgojjhw6tmsigf3zu

30 July 2022

https://api.fatcat.wiki/v0/release/ylacbkl75bgojjhw6tmsigf3zu

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/ylacbkl75bgojjhw6tmsigf3zu

1 reference

30 July 2022