Open source libraries and frameworks for biological data visualisation: a guide for developers (Q27687756)

publication date

April 2015

1 reference

1 April 2015

2 references

10 November 2020

25 November 2020

language of work or name

0 references

3 references

10 November 2020

25 November 2020

15

1 reference

issue

8

1 reference

page(s)

1356-74

1 reference

Creative Commons Attribution 3.0 Unported

copyright license

2 references

Europe PubMed Central

10 November 2020

Europe PubMed Central

publication type of scholarly work

25 November 2020

copyright status

copyrighted

0 references

review article

3 references

describes a project that uses

Europe PubMed Central

10 November 2020

25 November 2020

Jupyter notebook file

1 reference

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4409855/

Cytoscape

object named as

cytoscape

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Cytoscape

0 references

ggplot2

object named as

ggplot

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Visualizing biological data-now and in the future

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Visualizing changes of hierarchical data using treemaps

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29 September 2017

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3D complex: a structural classification of protein complexes

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29 September 2017

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29 September 2017

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PIES, a protein interaction extraction system.

29 September 2017

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On best practices in the development of bioinformatics software

29 September 2017

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2 June 2018

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2 June 2018

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2 June 2018

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2 June 2018

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Protovis: a graphical toolkit for visualization

2 June 2018

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Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 workshop report.

2 June 2018

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Matplotlib: A 2D Graphics Environment

21 January 2018

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Observing and interpreting correlations in metabolomic networks

21 January 2018

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Quantitative proteomics reveals subset-specific viral recognition in dendritic cells.

21 January 2018

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The murine testicular transcriptome: characterizing gene expression in the testis during the progression of spermatogenesis

21 January 2018

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A literature network of human genes for high-throughput analysis of gene expression

21 January 2018

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NodeTrix: a hybrid visualization of social networks

21 January 2018

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Hive plots--rational approach to visualizing networks.

21 January 2018

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OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals

21 January 2018

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ggplot2: Elegant Graphics for Data Analysis

21 January 2018

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A tour through the visualization zoo

21 January 2018

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Peptide fractionation by acid pH SDS-free electrophoresis

21 January 2018

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On Open Problems in Biological Network Visualization

21 January 2018

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Rolling the dice: multidimensional visual exploration using scatterplot matrix navigation

21 January 2018

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The FlowVizMenu and Parallel Scatterplot Matrix: Hybrid Multidimensional Visualizations for Network Exploration

27 November 2018

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inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies

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inferred from PubMed ID database lookup

12 December 2020

based on heuristic

PathGuide - model-based generation of guideline-compliant pathways for the use in different hospital information systems

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inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The eyes have it: a task by data type taxonomy for information visualizations

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Gephi: An Open Source Software for Exploring and Manipulating Networks

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Erratum: FragmentationAnalyzer: An open-source tool to analyze MS/MS fragmentation data

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https://opencitations.net/index/api/v1/references/10.1002/PMIC.201400377

Identifiers

DOI

10.1002/PMIC.201400377

1 reference

1 reference

1 reference

PubMed publication ID

25475079

1 reference