How to submit MS proteomics data to ProteomeXchange via the PRIDE database (Q30837745)

27 June 2017

title

How to submit MS proteomics data to ProteomeXchange via the PRIDE database (English)

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7

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Juan Antonio Vizcaíno

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Tobias Ternent

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Guadalupe Gómez-Baena

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Guadalupe Gómez-Baena

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Andrew Jones

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Andrew R Jones

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Robert J. Beynon

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Robert J Beynon

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author name string

Attila Csordas

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Da Qi

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27 June 2017

publication date

21 August 2014

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27 June 2017

language of work or name

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volume

14

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issue

20

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page(s)

2233-2241

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Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).

27 June 2017

cites work

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https://api.crossref.org/works/10.1002%2FPMIC.201400120

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400120

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400120

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

PASSEL: The PeptideAtlas SRMexperiment library

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

The mzIdentML data standard for mass spectrometry-based proteomics results

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

A posteriori quality control for the curation and reuse of public proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

PRIDE Inspector: a tool to visualize and validate MS proteomics data

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400120

PRIDE: quality control in a proteomics data repository

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

MS-viewer: a web-based spectral viewer for proteomics results

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

The Ontology Lookup Service: bigger and better

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

ProteoWizard: open source software for rapid proteomics tools development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

OpenMS - an open-source software framework for mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

PAnalyzer: a software tool for protein inference in shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

TagRecon: high-throughput mutation identification through sequence tagging

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

EasyProt--an easy-to-use graphical platform for proteomics data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400120

21 January 2018

Identifiers

DOI

10.1002/PMIC.201400120

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27 June 2017

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