YY1 Is a Structural Regulator of Enhancer-Promoter Loops (Q47311078)

http://europepmc.org/abstract/PMC/5785279

11 July 2018

title

YY1 Is a Structural Regulator of Enhancer-Promoter Loops (English)

1 reference

http://europepmc.org/abstract/PMC/5785279

11 July 2018

main subject

single cell transcriptomics

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Brian J. Abraham

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Malkiel A Cohen

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Behnam Nabet

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Denes Hnisz

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Richard A. Young

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

13

Rudolf Jaenisch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

15

Nathanael S Gray

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

5

Nancy M Hannett

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

3

Alicia V Zamudio

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

4

Alla A Sigova

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Abraham S Weintraub

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Daniel S Day

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Dennis L Buckley

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Yang Eric Guo

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

James E Bradner

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

language of work or name

English

0 references

publication date

7 December 2017

1 reference

http://europepmc.org/abstract/PMC/5785279

11 July 2018

external data available at URL

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103574

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

171

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

page(s)

1573-1588.e28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

12 June 2020

embryo

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

10x Genomics Chromium

1 reference

A curated database reveals trends in single-cell transcriptomics

YY1 Haploinsufficiency Causes an Intellectual Disability Syndrome Featuring Transcriptional and Chromatin Dysfunction

7 February 2021

cites work

1 reference

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YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment

15 July 2018

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Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.

15 July 2018

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Impact of cytosine methylation on DNA binding specificities of human transcription factors.

15 July 2018

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Transcription control by the ENL YEATS domain in acute leukaemia

15 July 2018

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15 July 2018

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15 July 2018

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Tail and Kinase Modules Differently Regulate Core Mediator Recruitment and Function In Vivo

15 July 2018

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Mediator Undergoes a Compositional Change during Transcriptional Activation.

15 July 2018

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HiChIP: efficient and sensitive analysis of protein-directed genome architecture

15 July 2018

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Gene regulation at a distance: From remote enhancers to 3D regulatory ensembles

15 July 2018

1 reference

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YY1 plays an essential role at all stages of B-cell differentiation

15 July 2018

1 reference

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CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation

15 July 2018

1 reference

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15 July 2018

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Activation of proto-oncogenes by disruption of chromosome neighborhoods.

15 July 2018

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CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

15 July 2018

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3D Chromosome Regulatory Landscape of Human Pluripotent Cells.

15 July 2018

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Transcriptional Enhancers: Bridging the Genome and Phenome

15 July 2018

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Transcription factor trapping by RNA in gene regulatory elements

15 July 2018

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Identification and characterization of essential genes in the human genome.

15 July 2018

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Comparison of Hi-C results using in-solution versus in-nucleus ligation

15 July 2018

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CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

15 July 2018

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An Overview of Genome Organization and How We Got There: from FISH to Hi-C

15 July 2018

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15 July 2018

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DRUG DEVELOPMENT. Phthalimide conjugation as a strategy for in vivo target protein degradation

15 July 2018

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Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

15 July 2018

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15 July 2018

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15 July 2018

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Chromatin proteomic profiling reveals novel proteins associated with histone-marked genomic regions

15 July 2018

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CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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Topologically associating domains are stable units of replication-timing regulation

15 July 2018

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Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

15 July 2018

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15 July 2018

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15 July 2018

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Structure of Yin Yang 1 oligomers that cooperate with RuvBL1-RuvBL2 ATPases

15 July 2018

1 reference

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The 3D genome in transcriptional regulation and pluripotency

15 July 2018

1 reference

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CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53.

15 July 2018

1 reference

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15 July 2018

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Topology of mammalian developmental enhancers and their regulatory landscapes

15 July 2018

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15 July 2018

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15 July 2018

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Architectural protein subclasses shape 3D organization of genomes during lineage commitment

15 July 2018

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Master transcription factors and mediator establish super-enhancers at key cell identity genes

15 July 2018

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The hierarchy of the 3D genome

15 July 2018

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Transcription factor YY1 is essential for regulation of the Th2 cytokine locus and for Th2 cell differentiation

15 July 2018

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15 July 2018

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Widespread plasticity in CTCF occupancy linked to DNA methylation

15 July 2018

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An integrated encyclopedia of DNA elements in the human genome

15 July 2018

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15 July 2018

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Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor

15 July 2018

1 reference

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Loss of maternal CTCF is associated with peri-implantation lethality of Ctcf null embryos

15 July 2018

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

15 July 2018

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

15 July 2018

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Enhancers as information integration hubs in development: lessons from genomics.

15 July 2018

1 reference

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The oncogenic role of Yin Yang 1

15 July 2018

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CTCF-binding elements mediate control of V(D)J recombination

15 July 2018

1 reference

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YY1 tethers Xist RNA to the inactive X nucleation center

15 July 2018

1 reference

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CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells

15 July 2018

1 reference

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Enhancer function: new insights into the regulation of tissue-specific gene expression

15 July 2018

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Functional and mechanistic diversity of distal transcription enhancers

15 July 2018

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GC-rich sequence elements recruit PRC2 in mammalian ES cells

15 July 2018

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

15 July 2018

1 reference

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The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation

15 July 2018

1 reference

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Mediator and cohesin connect gene expression and chromatin architecture

15 July 2018

1 reference

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A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate

15 July 2018

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A CTCF-independent role for cohesin in tissue-specific transcription

15 July 2018

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

15 July 2018

1 reference

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An oestrogen-receptor-α-bound human chromatin interactome

15 July 2018

1 reference

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CTCF: master weaver of the genome

15 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

15 July 2018

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The involvement of the transcription factor Yin Yang 1 in cancer development and progression.

15 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

15 July 2018

1 reference

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Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

15 July 2018

1 reference

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CTCF regulates cell cycle progression of alphabeta T cells in the thymus

15 July 2018

1 reference

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Model-based analysis of ChIP-Seq (MACS)

15 July 2018

1 reference

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Choose your partners: dimerization in eukaryotic transcription factors

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Cohesin mediates transcriptional insulation by CCCTC-binding factor

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

A YY1-INO80 complex regulates genomic stability through homologous recombination-based repair

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Yin Yang 1 is a critical regulator of B-cell development

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

The ins and outs of gene regulation and chromosome territory organisation

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Chromatin immunoprecipitation and microarray-based analysis of protein location

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Transcription factor YY1: structure, function, and therapeutic implications in cancer biology.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

The human genome browser at UCSC

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter tts DNA-binding specificity

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Targeted disruption of mouse Yin Yang 1 transcription factor results in peri-implantation lethality.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Unlocking the mechanisms of transcription factor YY1: are chromatin modifying enzymes the key?

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

A widely expressed transcription factor with multiple DNA sequence specificity, CTCF, is localized at chromosome segment 16q22.1 within one of the smallest regions of overlap for common deletions in breast and prostate cancers

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Everything you have ever wanted to know about Yin Yang 1......

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

DNA bending by the silencer protein NeP1 is modulated by TR and RXR

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

DNA bending and orientation-dependent function of YY1 in the c-fos promoter.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

DNA flexibility studied by covalent closure of short fragments into circles

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Multipartite genetic control elements: communication by DNA loop

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Modular structure of a chicken lysozyme silencer: involvement of an unusual thyroid hormone receptor binding site

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Isolation of a candidate repressor/activator, NF-E1 (YY-1, delta), that binds to the immunoglobulin kappa 3' enhancer and the immunoglobulin heavy-chain mu E1 site

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Delta, a transcription factor that binds to downstream elements in several polymerase II promoters, is a functionally versatile zinc finger protein

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Diversity and specificity in transcriptional regulation: the benefits of heterotypic dimerization

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Transcriptional repression by YY1, a human GLI-Krüppel-related protein, and relief of repression by adenovirus E1A protein

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

MELK is not necessary for the proliferation of basal-like breast cancer cells

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Gene Regulation: Activation through Space.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Enhancer loops appear stable during development and are associated with paused polymerase.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

DNA-binding factors shape the mouse methylome at distal regulatory regions

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

NeP1. A ubiquitous transcription factor synergizes with v-ERBA in transcriptional silencing

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5785279

14 August 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/29224777

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29224777

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Organization and function of the 3D genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29224777

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2017.11.008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29224777%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference