HiChIP: efficient and sensitive analysis of protein-directed genome architecture (Q33883075)

29 July 2017

HiChIP: efficient and sensitive analysis of protein-directed genome architecture (English)

1 reference

29 July 2017

Maxwell R Mumbach

1

0 references

Ryan Flynn

object named as

Ryan A Flynn

3

0 references

William Greenleaf

6

object named as

William J Greenleaf

1 reference

29 July 2017

Adam J Rubin

2

1 reference

29 July 2017

Chao Dai

4

1 reference

29 July 2017

Paul A Khavari

5

1 reference

29 July 2017

Howard Y Chang

7

1 reference

29 July 2017

language of work or name

English

0 references

publication date

19 September 2016

1 reference

29 July 2017

1 reference

29 July 2017

13

1 reference

29 July 2017

919-922

1 reference

29 July 2017

11

1 reference

https://scigraph.springernature.com/pub.10.1038/nmeth.3999

29 July 2017

0 references

cites work

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Structural organization of the inactive X chromosome in the mouse.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

3D Chromosome Regulatory Landscape of Human Pluripotent Cells.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Multiplexed analysis of chromosome conformation at vastly improved sensitivity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Comparison of Hi-C results using in-solution versus in-nucleus ligation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Mango: a bias-correcting ChIA-PET analysis pipeline

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Genome-wide map of regulatory interactions in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Targeted Chromatin Capture (T2C): a novel high resolution high throughput method to detect genomic interactions and regulatory elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Organization of the mitotic chromosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

A high-resolution map of the three-dimensional chromatin interactome in human cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Spatial partitioning of the regulatory landscape of the X-inactivation centre

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Topological domains in mammalian genomes identified by analysis of chromatin interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Mediator and cohesin connect gene expression and chromatin architecture

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

An oestrogen-receptor-α-bound human chromatin interactome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Model-based analysis of ChIP-Seq (MACS)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5501173

Long-Range Chromatin Interactions

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.3999

21 January 2018

Identifiers

DOI

10.1038/NMETH.3999

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference