Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome (Q24648552)

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Tae Hoon Kim

object named as

Tae Hoon Kim

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author name string

Ziedulla K Abdullaev

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Keith A Ching

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Dmitri I Loukinov

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Roland D Green

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Michael Q Zhang

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Bing Ren

CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2

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publication date

23 March 2007

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language of work or name

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128

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issue

6

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page(s)

1231-45

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cites work

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Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes

7 April 2017

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

7 April 2017

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7 April 2017

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7 April 2017

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A widely expressed transcription factor with multiple DNA sequence specificity, CTCF, is localized at chromosome segment 16q22.1 within one of the smallest regions of overlap for common deletions in breast and prostate cancers

7 April 2017

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The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation

7 April 2017

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An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

7 April 2017

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X-inactivation profile reveals extensive variability in X-linked gene expression in females

7 April 2017

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The transcriptional landscape of the mammalian genome

7 April 2017

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Worms gang up on bacteria

7 April 2017

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Interchromosomal interactions and olfactory receptor choice

7 April 2017

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Boundaries between chromosomal domains of X inactivation and escape bind CTCF and lack CpG methylation during early development

7 April 2017

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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

7 April 2017

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CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species

7 April 2017

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The many roles of the transcriptional regulator CTCF

7 April 2017

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The novel BORIS + CTCF gene family is uniquely involved in the epigenetics of normal biology and cancer

7 April 2017

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Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter tts DNA-binding specificity

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease

7 April 2017

1 reference

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Design and selection of novel Cys2His2 zinc finger proteins

7 April 2017

2 references

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CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus

7 April 2017

1 reference

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Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene

7 April 2017

1 reference

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The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

7 April 2017

1 reference

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A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene

7 April 2017

1 reference

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Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors

7 April 2017

1 reference

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Transgenic RNAi reveals essential function for CTCF in H19 gene imprinting

7 April 2017

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The ENCODE (ENCyclopedia Of DNA Elements) Project

7 April 2017

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Genome-wide analysis of estrogen receptor binding sites

7 April 2017

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Genome-wide analysis of mammalian promoter architecture and evolution

7 April 2017

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A global map of p53 transcription-factor binding sites in the human genome

7 April 2017

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A high-resolution map of active promoters in the human genome

7 April 2017

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Genomic maps and comparative analysis of histone modifications in human and mouse

7 April 2017

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Genome-wide analysis of protein-DNA interactions

7 April 2017

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The role of chromatin structure in regulating the expression of clustered genes.

28 September 2017

1 reference

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Chromatin boundaries and chromatin domains.

28 September 2017

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Mining ChIP-chip data for transcription factor and cofactor binding sites

28 September 2017

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Direct isolation and identification of promoters in the human genome

28 September 2017

1 reference

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Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

CTCF is conserved from Drosophila to humans and confers enhancer blocking of the Fab-8 insulator

28 September 2017

1 reference

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Identifying tissue-selective transcription factor binding sites in vertebrate promoters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

Molecular links between X-inactivation and autosomal imprinting: X-inactivation as a driving force for the evolution of imprinting?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

Chromatin Insulators and Boundaries: Effects on Transcription and Nuclear Organization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

Looping versus linking: toward a model for long-distance gene activation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

Negative transcriptional regulation mediated by thyroid hormone response element 144 requires binding of the multivalent factor CTCF to a novel target DNA sequence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

Negative protein 1, which is required for function of the chicken lysozyme gene silencer in conjunction with hormone receptors, is identical to the multivalent zinc finger repressor CTCF.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

Modular structure of a chicken lysozyme silencer: involvement of an unusual thyroid hormone receptor binding site

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

5-Methylcytosine as an Endogenous Mutagen in the Human LDL Receptor and p53 Genes

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2572726

Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17382889

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Shifting insulator boundaries

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17382889

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The fundamental role of epigenetic events in cancer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17382889

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2006.12.048

1 reference

1 reference

1 reference

PubMed publication ID

17382889

1 reference