Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Q21183894)

17 August 2022

4

Steven L Salzberg

Steven L

Salzberg

1 reference

17 August 2022

1

Ben Langmead

Ben

Langmead

1 reference

17 August 2022

2

Cole Trapnell

Cole

Trapnell

1 reference

1049583368

publication type of scholarly work

17 August 2022

publication date

2009

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language of work or name

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10

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issue

3

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page(s)

R25

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review article

1 reference

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

Europe PubMed Central

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

The diploid genome sequence of an Asian individual

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Accurate whole human genome sequencing using reversible terminator chemistry

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Mapping short DNA sequencing reads and calling variants using mapping quality scores

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

ZOOM! Zillions of oligos mapped

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

The transcriptional landscape of the yeast genome defined by RNA sequencing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Identification of common molecular subsequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

SOAP: short oligonucleotide alignment program

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

PatternHunter: faster and more sensitive homology search

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Genome-wide mapping of in vivo protein-DNA interactions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Using quality scores and longer reads improves accuracy of Solexa read mapping

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

SeqAn an efficient, generic C++ library for sequence analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Space-efficient whole genome comparisons with Burrows-Wheeler transforms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Annotating large genomes with exact word matches

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Optimized design and assessment of whole genome tiling arrays.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

Compressed indexing and local alignment of DNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

DNA sequencing. A plan to capture human diversity in 1000 genomes

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19261174

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2009-10-3-R25

1 reference

33dbeef5-27bb-329c-bde4-a5bba6b58a55

1049583368

0 references

Mendeley publication ID

1 reference

https://www.mendeley.com/catalogue/33dbeef5-27bb-329c-bde4-a5bba6b58a55/

title

Ultrafast and memory-efficient al... preview & related info | Mendeley (British English)

8 October 2022

1 reference

1 reference

PubMed publication ID

19261174

1 reference