Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction (Q33568794)

28 July 2017

Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction (English)

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28 July 2017

Jakub Mieczkowski

2

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author name string

Britta Mueller

1

1 reference

28 July 2017

Sharmistha Kundu

3

1 reference

28 July 2017

Peggy Wang

4

1 reference

28 July 2017

Ruslan Sadreyev

5

1 reference

28 July 2017

Michael Y Tolstorukov

6

1 reference

28 July 2017

Robert E Kingston

7

1 reference

28 July 2017

29 March 2017

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28 July 2017

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28 July 2017

31

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28 July 2017

5

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28 July 2017

451-462

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describes a project that uses

28 July 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/5393060

based on heuristic

inferred from PubMed Central ID database lookup

cites work

MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers

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The unfolded protein response in immunity and inflammation

21 June 2018

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MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

21 June 2018

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The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation

21 June 2018

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Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster

21 June 2018

1 reference

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MPE-seq, a new method for the genome-wide analysis of chromatin structure

21 June 2018

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Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming

21 June 2018

1 reference

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Enhancers, enhancers - from their discovery to today's universe of transcription enhancers

21 June 2018

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limma powers differential expression analyses for RNA-sequencing and microarray studies

21 June 2018

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ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide

21 June 2018

1 reference

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Pioneer transcription factors in cell reprogramming

21 June 2018

1 reference

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Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming

21 June 2018

1 reference

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Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription

21 June 2018

1 reference

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Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed.

21 June 2018

1 reference

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Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

21 June 2018

1 reference

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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

21 June 2018

1 reference

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Multiplexed Illumina sequencing libraries from picogram quantities of DNA

21 June 2018

1 reference

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GC-content normalization for RNA-Seq data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

The unfolded protein response: from stress pathway to homeostatic regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Analysis of primary structure of chromatin with next-generation sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation

21 June 2018

1 reference

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High-resolution genome-wide mapping of the primary structure of chromatin

21 June 2018

1 reference

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The biology of chromatin remodeling complexes

21 June 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

21 June 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 June 2018

1 reference

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Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Design and analysis of ChIP-seq experiments for DNA-binding proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Nucleosome organization in the Drosophila genome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Decay of endoplasmic reticulum-localized mRNAs during the unfolded protein response.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Genome-scale identification of nucleosome positions in S. cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Cooperation between complexes that regulate chromatin structure and transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Promoter targeting and chromatin remodeling by the SWI/SNF complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Chromatin Structure: A Repeating Unit of Histones and DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Facilitated binding of GAL4 and heat shock factor to nucleosomal templates: differential function of DNA-binding domains.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393060

Nucleosome Stability Distinguishes Two Different Promoter Types at All Protein-Coding Genes in Yeast.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1101%2FGAD.293118.116

Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1101%2FGAD.293118.116

21 January 2018

Identifiers

DOI

10.1101/GAD.293118.116

1 reference

28 July 2017

1 reference

28 July 2017

1 reference