TopHat: discovering splice junctions with RNA-Seq (Q24655505)

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English	TopHat: discovering splice junctions with RNA-Seq	scientific article

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instance of

scholarly article

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title

TopHat: discovering splice junctions with RNA-Seq (English)

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main subject

computational mathematics

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1 reference

3

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Lior Pachter

series ordinal

2

object named as

Lior Pachter

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Cole Trapnell

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1

object named as

Cole Trapnell

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publication date

1 May 2009

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language of work or name

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25

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issue

9

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page(s)

1105-11

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describes a project that uses

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

retrieved

7 April 2017

Mapping short DNA sequencing reads and calling variants using mapping quality scores

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

retrieved

7 April 2017

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

retrieved

7 April 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

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7 April 2017

BLAT—The BLAST-Like Alignment Tool

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

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7 April 2017

Isolation of a brefeldin A-inhibited guanine nucleotide-exchange protein for ADP ribosylation factor (ARF) 1 and ARF3 that contains a Sec7-like domain

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

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7 April 2017

Mapping and quantifying mammalian transcriptomes by RNA-Seq

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

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7 April 2017

Alternative isoform regulation in human tissue transcriptomes

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

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7 April 2017

Stem cell transcriptome profiling via massive-scale mRNA sequencing

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PubMed Central

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7 April 2017

Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library

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PubMed Central

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7 April 2017

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

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PubMed Central

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7 April 2017

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

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PubMed Central

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7 April 2017

Optimal spliced alignments of short sequence reads

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

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28 September 2017

SeqAn an efficient, generic C++ library for sequence analysis

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PubMed Central

reference URL

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28 September 2017

AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.

1 reference

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28 September 2017

Whole-genome sequencing and variant discovery in C. elegans.

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28 November 2018

Intron size in mammals: complexity comes to terms with economy

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628

retrieved

28 November 2018

Replacing suffix trees with enhanced suffix arrays

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP120

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP120

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

154823

DBLP publication ID

journals/bioinformatics/TrapnellPS09

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

OpenCitations bibliographic resource ID

154823

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

154823

PubMed publication ID

19289445

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

154823

ResearchGate publication ID

24203835

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TopHat: discovering splice junctions with RNA-Seq (Q24655505)

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