Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping. (Q51302596)

3 April 2018

title

Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping. (English)

1 reference

3 April 2018

author name string

Lilien N Voong

1

1 reference

3 April 2018

Liqun Xi

2

1 reference

3 April 2018

Amy C Sebeson

3

1 reference

3 April 2018

Bin Xiong

4

1 reference

3 April 2018

Ji-Ping Wang

5

1 reference

3 April 2018

Xiaozhong Wang

6

1 reference

3 April 2018

language of work or name

English

0 references

publication date

22 November 2016

1 reference

3 April 2018

published in

Cell

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3 April 2018

volume

167

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3 April 2018

issue

6

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3 April 2018

page(s)

1555-1570.e15

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3 April 2018

Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing

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A locally convoluted cluster model for nucleosome positioning signals in chemical map.

22 May 2018

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CTCF: an architectural protein bridging genome topology and function

22 May 2018

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Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase

22 May 2018

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22 May 2018

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Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning

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Master transcription factors and mediator establish super-enhancers at key cell identity genes

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Determinants of nucleosome positioning

22 May 2018

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Precise maps of RNA polymerase reveal how promoters direct initiation and pausing

22 May 2018

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Controls of nucleosome positioning in the human genome.

22 May 2018

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Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome

22 May 2018

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Genome-wide nucleosome positioning during embryonic stem cell development

22 May 2018

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22 May 2018

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A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern.

22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

1 reference

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Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135608

Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135608

Evidence against a genomic code for nucleosome positioning. Reply to "Nucleosome sequence preferences influence in vivo nucleosome organization.".

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135608

Predicting nucleosome positioning using a duration Hidden Markov Model

22 May 2018

1 reference

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22 May 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

22 May 2018

1 reference

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Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome

22 May 2018

1 reference

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Nucleosomes are well positioned in exons and carry characteristic histone modifications

22 May 2018

1 reference

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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

22 May 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

22 May 2018

1 reference

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22 May 2018

1 reference

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Poly(dA:dT) tracts: major determinants of nucleosome organization

22 May 2018

1 reference

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22 May 2018

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

22 May 2018

1 reference

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22 May 2018

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22 May 2018

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22 May 2018

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Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

22 May 2018

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Alteration of nucleosome structure as a mechanism of transcriptional regulation

22 May 2018

1 reference

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Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals

22 May 2018

1 reference

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Nucleosome Stability Distinguishes Two Different Promoter Types at All Protein-Coding Genes in Yeast.

22 May 2018

1 reference

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Nucleosome positioning as a determinant of exon recognition

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135608

Gene splice sites correlate with nucleosome positions

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135608

Chromatin organization marks exon-intron structure

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135608

Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

30 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27889238

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27889238

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2016.10.049

1 reference

3 April 2018

PMCID

5135608

1 reference

3 April 2018

PubMed ID

27889238

1 reference

3 April 2018