Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes (Q37222781)

19 August 2017

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes (English)

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19 August 2017

2

Peter V Kharchenko

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19 August 2017

Michael Y Tolstorukov

1

1 reference

19 August 2017

Joseph A Goldman

3

1 reference

19 August 2017

Robert E Kingston

4

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19 August 2017

Peter J Park

5

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19 August 2017

language of work or name

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26 February 2009

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19 August 2017

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19 August 2017

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19 August 2017

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19 August 2017

967-977

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describes a project that uses

19 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2694475/fullTextXML

inferred from PubMed Central ID database lookup

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6 September 2017

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The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

6 September 2017

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6 September 2017

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Dynamic regulation of nucleosome positioning in the human genome

6 September 2017

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6 September 2017

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A high-resolution atlas of nucleosome occupancy in yeast

6 September 2017

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Nucleosome positioning signals in genomic DNA

6 September 2017

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A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning

6 September 2017

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High-resolution profiling of histone methylations in the human genome

6 September 2017

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Rules and regulation in the primary structure of chromatin

6 September 2017

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Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

6 September 2017

1 reference

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Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters

6 September 2017

1 reference

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Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

6 September 2017

1 reference

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A genomic code for nucleosome positioning

6 September 2017

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Analysis of human histone H2AZ deposition in vivo argues against its direct role in epigenetic templating mechanisms

6 September 2017

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The human CENP-A centromeric nucleosome-associated complex

6 September 2017

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Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning

6 September 2017

1 reference

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Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Structural characterization of histone H2A variants

6 September 2017

1 reference

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A-tract clusters may facilitate DNA packaging in bacterial nucleoid

6 September 2017

1 reference

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Genome-scale identification of nucleosome positions in S. cerevisiae

6 September 2017

1 reference

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6 September 2017

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Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

6 September 2017

1 reference

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ATP-dependent nucleosome remodeling

6 September 2017

1 reference

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Role of DNA sequence in nucleosome stability and dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Initial sequencing and analysis of the human genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Crystal structure of a nucleosome core particle containing the variant histone H2A.Z

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.

6 September 2017

1 reference

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Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Crystal structure of the nucleosome core particle at 2.8 A resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

The pitch of chromatin DNA is reflected in its nucleotide sequence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Sequence-dependent bending of DNA and phasing of nucleosomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Artificial nucleosome positioning sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

6 September 2017

Nucleosome positioning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Sequence-dependent deformational anisotropy of chromatin DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Periodicity in DNA primary structure is defined by secondary structure of the coded protein

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

High sequence specificity of micrococcal nuclease

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

DNA bending and its relation to nucleosome positioning.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Sequence periodicities in chicken nucleosome core DNA.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. elegans

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

High-throughput mapping of the chromatin structure of human promoters.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Analysis of high density expression microarrays with signed-rank call algorithms.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Robust estimators for expression analysis.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

Histone H2A.Z acetylation modulates an essential charge patch

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694475

The essential histone variant H2A.Z regulates the equilibrium between different chromatin conformational states

3 September 2018

1 reference

12 December 2020

The conformation dependent hydrolysis of DNA by micrococcal nuclease

1 reference

12 December 2020

Sequence structure of human nucleosome DNA

1 reference

12 December 2020

Another potential artifact in the study of nucleosome phasing by chromatin digestion with micrococcal nuclease

1 reference

12 December 2020

Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences

1 reference

12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.084830.108

1 reference

19 August 2017

1 reference

19 August 2017

1 reference