Wikidata:Property proposal/gene sequence
gene sequence[edit]
Originally proposed at Wikidata:Property proposal/Natural science
| Description | MISSING |
|---|---|
| Represents | protein-coding gene (Q20747295) |
| Data type | String |
| Domain | gene (Q7187) |
| Allowed values | ...ATGGCCGGCGTCACCAAGGCCGCTGTTGT... -> 5000 characters |
| Allowed units | none |
| Example 1 | LINF_190011200 (Q63396687) -> ...ATGGCCGGCGTCACCAAGGCCGCTGTTGTGGCCAGCCACCCGA... |
| Example 2 | LINF_160007400 (Q63283936) -> ...ATGGAGGTGAACGCTACGCTGATCGACTGCTGCGACCCGCAGAGGCCGTCGAGGGTGCT... |
| Example 3 | LINF_160008400 (Q63289560) -> ...ATGCATGCCACGCTTCTGCGCCGTGCGATACGCACGGTGGTGCCACCCCCAAAGGCCTC... |
| Example 4 | LINF_160009500 (Q63290875) -> ...ATGAACGTGAGCTTTCTCTTCAGCCTCCCCCGCAGCCTGGCGGAGTTCAAGGGAGCGG... |
Motivation[edit]
– The preceding unsigned comment was added by Conny (talk • contribs) at 16:36, April 30, 2019 (UTC).
For Wikidata entries of genes (and there are many), to include the nucleotide sequence would be really helpful for people working in biomedical sciences. Thus, someone can directly pick up the sequence and made comparisons with other gene sequences from a different organism.
- Currently, to the best of my knowledge, there is not any property in the Wikidata server that allows to include a string longer than 1500 characters. – The preceding unsigned comment was added by JMRR-UAM (talk • contribs) at 04:59, May 1, 2019 (UTC).
Discussion[edit]
For questions you can contact User:JMRR-UAM.
Support David (talk) 06:33, 1 May 2019 (UTC)
Comment @JMRR-UAM, Conny: There is a hard limit on the size of string-valued properties in wikidata - I believe the limit is 1500 characters. If you would need more than that then this property will not work for what you want. ArthurPSmith (talk) 19:38, 1 May 2019 (UTC)
David, ArthurPSmith: As long it is not possbile, how to handle data, because User:JMRR-UAM is active and want to integrate his data. Regards, Conny (talk) 14:57, 14 May 2019 (UTC).
@JMRR-UAM: Is it possbile to store data on a extern place, where Wikidata can connect via Permalink/ID? Regards, Conny (talk) 14:57, 14 May 2019 (UTC).
Notified participants of WikiProject Biology
@Lydia_Pintscher_(WMDE): Would it be possible to allow the 5000 limit for this property? ChristianKl ❪✉❫ 08:43, 15 May 2019 (UTC)
- I believe we can only do that per datatype. I'll check. --Lydia Pintscher (WMDE) (talk) 20:23, 19 May 2019 (UTC)
- Indeed this is only possible to configure per datatype at this point. --Lydia Pintscher (WMDE) (talk) 08:04, 23 May 2019 (UTC)
Oppose Should be modeled along codon (Q165052). --Succu (talk) 20:53, 20 May 2019 (UTC)- @Conny, JMRR-UAM: have you looked into storing these gene sequences in Wikimedia commons? This property could then have a commons file datatype. ArthurPSmith (talk) 17:32, 23 May 2019 (UTC)
- Oppose can result server problems per Succu, suggest to introduce a QR-code datatype to store such things. --Liuxinyu970226 (talk) 07:56, 9 June 2019 (UTC)