Genome-wide nucleosome positioning during embryonic stem cell development (Q28277658)

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15 February 2020

title

Genome-wide nucleosome positioning during embryonic stem cell development (English)

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15 February 2020

1

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15 February 2020

Vladimir B. Teif

2

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15 February 2020

Yevhen Vainshtein

3

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15 February 2020

Maïwen Caudron-Herger

4

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15 February 2020

Thomas Höfer

7

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15 February 2020

Karsten Rippe

8

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15 February 2020

author name string

Jan-Philipp Mallm

5

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15 February 2020

Caroline Marth

6

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15 February 2020

language of work or name

English

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publication date

21 October 2012

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Nature Structural & Molecular Biology

15 February 2020

published in

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15 February 2020

volume

19

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15 February 2020

page(s)

1185-1192

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15 February 2020

issue

11

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Genome-wide "re"-modeling of nucleosome positions.

15 February 2020

cites work

1 reference

Chromatin and transcription in yeast

21 January 2018

1 reference

High-resolution genome-wide mapping of the primary structure of chromatin

21 January 2018

1 reference

Genome-wide approaches to determining nucleosome occupancy in metazoans using MNase-Seq

21 January 2018

1 reference

Genome-scale identification of nucleosome positions in S. cerevisiae

21 January 2018

1 reference

A genomic code for nucleosome positioning

21 January 2018

1 reference

Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1

21 January 2018

1 reference

Determinants of nucleosome organization in primary human cells

21 January 2018

1 reference

Nucleosome occupancy reveals regulatory elements of the CFTR promoter.

21 January 2018

1 reference

Dynamic regulation of nucleosome positioning in the human genome

21 January 2018

1 reference

Stable and dynamic nucleosome states during a meiotic developmental process

21 January 2018

1 reference

Widespread remodeling of mid-coding sequence nucleosomes by Isw1.

21 January 2018

1 reference

Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner

21 January 2018

1 reference

The nucleosome map of the mammalian liver

21 January 2018

1 reference

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 January 2018

1 reference

Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes.

21 January 2018

1 reference

A map of the cis-regulatory sequences in the mouse genome

21 January 2018

1 reference

The DNA-encoded nucleosome organization of a eukaryotic genome

21 January 2018

1 reference

CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression

21 January 2018

1 reference

An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network.

21 January 2018

1 reference

Control of Drosophila endocycles by E2F and CRL4(CDT2).

21 January 2018

1 reference

Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities

21 January 2018

1 reference

Targeting chromatin remodelers: signals and search mechanisms.

21 January 2018

1 reference

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

21 January 2018

1 reference

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

21 January 2018

1 reference

CTCF-mediated functional chromatin interactome in pluripotent cells

21 January 2018

1 reference

Nucleosome organization in the Drosophila genome.

21 January 2018

1 reference

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

21 January 2018

1 reference

Poly(dA:dT) tracts: major determinants of nucleosome organization

21 January 2018

1 reference

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

21 January 2018

1 reference

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

21 January 2018

1 reference

Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation

21 January 2018

1 reference

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

21 January 2018

1 reference

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

21 January 2018

1 reference

Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation

21 January 2018

1 reference

Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells

21 January 2018

1 reference

Multiple nucleosome positioning sites regulate the CTCF-mediated insulator function of the H19 imprinting control region

21 January 2018

1 reference

Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells

21 January 2018

1 reference

Multiple distinct stimuli increase measured nucleosome occupancy around human promoters

21 January 2018

1 reference

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

21 January 2018

1 reference

Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length

21 January 2018

1 reference

H1 linker histones are essential for mouse development and affect nucleosome spacing in vivo

21 January 2018

1 reference

Short nucleosome repeats impose rotational modulations on chromatin fibre folding

21 January 2018

1 reference

The effect of micrococcal nuclease digestion on nucleosome positioning data

21 January 2018

1 reference

A novel mechanism of epigenetic regulation: nucleosome-space occupancy

21 January 2018

1 reference

Micrococcal nuclease does not substantially bias nucleosome mapping

21 January 2018

1 reference

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation

21 January 2018

1 reference

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions

21 January 2018

1 reference

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

Next generation sequencing in functional genomics

21 January 2018

1 reference

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 January 2018

1 reference

Coding RNAs with a non-coding function: maintenance of open chromatin structure

21 January 2018

1 reference

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

1 reference

Differential expression analysis for sequence count data

21 January 2018

1 reference

Nucleosome positions predicted through comparative genomics

21 January 2018

1 reference

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

31 March 2020

1 reference

Amylases in the Human Vagina

31 March 2020

1 reference

Generation of conditional null alleles for APP and APLP2.

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23085715

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23085715

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NSMB.2419

2 references

Consolidated OpenCitations Corpus – April 2017

2427384

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15 February 2020

2427384

1 reference

Consolidated OpenCitations Corpus – April 2017

Consolidated OpenCitations Corpus – April 2017

2 references

2427384

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23085715%20AND%20SRC:MED&resulttype=core&format=json