The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis (Q47236897)

12 January 2018

title

The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis (English)

1 reference

12 January 2018

1 reference

Gustavo Caetano-Anollés

series ordinal

1

object named as

Gustavo Caetano-Anollés

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12 January 2018

author name string

Kyung Mo Kim

series ordinal

2

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12 January 2018

Derek Caetano-Anollés

series ordinal

3

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12 January 2018

publication date

1 January 2012

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12 January 2018

Journal of Molecular Evolution

published in

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12 January 2018

volume

74

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12 January 2018

page(s)

1-34

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12 January 2018

issue

1-2

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12 January 2018

https://scigraph.springernature.com/pub.10.1007/s00239-011-9480-1

exact match

0 references

cites work

Plasticity, evolvability, and modularity in RNA

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Data growth and its impact on the SCOP database: new developments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Design of a directed molecular network

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Exploring protein sequence space using knowledge-based potentials.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Studies on medium-chain fatty acyl-coenzyme A synthetase. Enzyme fraction I: mechanism of reaction and allosteric properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

PROCOGNATE: a cognate ligand domain mapping for enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The cytidylyltransferase superfamily: identification of the nucleotide-binding site and fold prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

An evolutionarily structured universe of protein architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The origin, evolution and structure of the protein world.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The origin and evolution of modern metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Proteome evolution and the metabolic origins of translation and cellular life.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

X-ray crystal structures of 70S ribosome functional complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Current understanding of fatty acid biosynthesis and the acyl carrier protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The emergence of competition between model protocells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Conformation of twisted β-pleated sheets in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Genomic and structural aspects of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The kinetics of enzyme-catalyzed reactions with two or more substrates or products

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Exploring the universe of protein structures beyond the Protein Data Bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Aminoacylation of tRNAs as critical step of protein biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The extant core bacterial proteome is an archive of the origin of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Adenine recognition: a motif present in ATP-, CoA-, NAD-, NADP-, and FAD-dependent proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The non-monophyletic origin of the tRNA molecule and the origin of genes only after the evolutionary stage of the last universal common ancestor (LUCA).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Synthesis of (di)adenosine polyphosphates by non-ribosomal peptide synthetases (NRPS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The protein folding problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Rational genomics I: antisense open reading frames and codon bias in short-chain oxido reductase enzymes and the evolution of the genetic code

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

History of biological metal utilization inferred through phylogenomic analysis of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Periplasmic binding proteins: a versatile superfamily for protein engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A model for the origin of life.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Evolutionary origins and directed evolution of RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Isotopic evidence for extraterrestrial non-racemic amino acids in the Murchison meteorite

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Membrane protein folding: beyond the two stage model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Biosynthesis of nonribosomal peptides1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The CoFactor database: organic cofactors in enzyme catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

FlexOracle: predicting flexible hinges by identification of stable domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The Database of Macromolecular Motions: new features added at the decade mark

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Modelling 'evo-devo' with RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Domain tree-based analysis of protein architecture evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

tRNA as an active chemical scaffold for diverse chemical transformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Investigations of valanimycin biosynthesis: elucidation of the role of seryl-tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Inferring the palaeoenvironment of ancient bacteria on the basis of resurrected proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A structural census of the current population of protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Cyclodipeptide synthases are a family of tRNA-dependent peptide bond-forming enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A signal relay between ribosomal protein S12 and elongation factor EF-Tu during decoding of mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Novel protein folds and their nonsequential structural analogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Conformational dynamics in the Acyl-CoA synthetases, adenylation domains of non-ribosomal peptide synthetases, and firefly luciferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

New functions of aminoacyl-tRNA synthetases beyond translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The thiolase superfamily: condensing enzymes with diverse reaction specificities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Experimental models of primitive cellular compartments: encapsulation, growth, and division

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Cooperative kinetics of both Hsp104 ATPase domains and interdomain communication revealed by AAA sensor-1 mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Structural and functional mapping of the archaeal multi-aminoacyl-tRNA synthetase complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

An aminoacyl-tRNA synthetase:elongation factor complex for substrate channeling in archaeal translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

ABC Transporters: From Microorganisms to Man

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Geometry and symmetry presculpt the free-energy landscape of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Partitioning protein structures into domains: why is it so difficult?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Peptides by activation of amino acids with CO on (Ni,Fe)S surfaces: implications for the origin of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Crystal structure of the ATP-binding subunit of an ABC transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The sugar kinase/heat shock protein 70/actin superfamily: implications of conserved structure for mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Structure is three to ten times more conserved than sequence-A study of structural response in protein cores

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Evolutionary history and higher order classification of AAA+ ATPases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A Novel Adenylate Binding Site Confers Phosphopantetheine Adenylyltransferase Interactions with Coenzyme A

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Enzyme recruitment in evolution of new function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Reconstructing the evolutionary history of the artiodactyl ribonuclease superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Autocatalysis and organocatalysis with synthetic structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Autocatalytic sets of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Question 1: origin of life and the living state.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Medium- and short-chain dehydrogenase/reductase gene and protein families : the SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Functional proteins from a random-sequence library

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Emergence and evolution of modern molecular functions inferred from phylogenomic analysis of ontological data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The proteomic complexity and rise of the primordial ancestor of diversified life

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

MANET: tracing evolution of protein architecture in metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Diadenosine oligophosphates (Ap(n)A), a novel class of signalling molecules?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Structural insights into nonribosomal peptide enzymatic assembly lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Structurally analogous proteins do exist!

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The RNA dreamtime: modern cells feature proteins that might have supported a prebiotic polypeptide world but nothing indicates that RNA world ever was.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Protein folding absent selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A self-replicating peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Aminoacyl-tRNA synthetase complexes: beyond translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Nature of the protein universe

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Self-sustained replication of an RNA enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Mechanism of tRNA-dependent editing in translational quality control

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Structure and function of ABC transporters: the ATP switch provides flexible control

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A novel ADP- and zinc-binding fold from function-directed in vitro evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Review. Structure and mechanism of ATP-binding cassette transporters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Association energetics of membrane spanning alpha-helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Template-directed synthesis of a genetic polymer in a model protocell

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Working outside the protein-synthesis rules: insights into non-ribosomal peptide synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

On the origin of biochemistry at an alkaline hydrothermal vent

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Molecular uniformity in biological catalyses. The enzymes concerned with firefly luciferin, amino acid, and fatty acid utilization are compared

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Predicting the conformations of peptides and proteins in early evolution. A review article submitted to Biology Direct

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

RNA-assisted catalysis in a protein enzyme: The 2'-hydroxyl of tRNA(Thr) A76 promotes aminoacylation by threonyl-tRNA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

How did cells get their size?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Principles determining the structure of beta-sheet barrels in proteins. I. A theoretical analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Making sense of mimic in translation termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The peptaibol antiamoebin as a model ion channel: similarities to bacterial potassium channels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Theory of protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The implausibility of metabolic cycles on the prebiotic Earth

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Crystal structure of an ancient protein: evolution by conformational epistasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Permeation of protons, potassium ions, and small polar molecules through phospholipid bilayers as a function of membrane thickness

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The evolution of connectivity in metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A minimal TrpRS catalytic domain supports sense/antisense ancestry of class I and II aminoacyl-tRNA synthetases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Self-assembly and function of primitive cell membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The origin and early evolution of membrane channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Helical membrane protein folding, stability, and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Helix insertion into bilayers and the evolution of membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Aminoacyl-tRNA synthetases: potential markers of genetic code development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Two classes of tRNA synthetases suggested by sterically compatible dockings on tRNA acceptor stem

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The structural basis of ribozyme-catalyzed RNA assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Peptides and the origin of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The first steps of chemical evolution towards the origin of life

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1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Two types of aminoacyl-tRNA synthetases could be originally encoded by complementary strands of the same nucleic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Recent mechanistic insights into eukaryotic ribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Tracing pathways of transport protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The Transporter Classification Database: recent advances

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Selection and evolution of enzymes from a partially randomized non-catalytic scaffold

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1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A synthetic peptide ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Structural Insights into the Evolution of a Non-Biological Protein: Importance of Surface Residues in Protein Fold Optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Catalytic versatility, stability, and evolution of the (betaalpha)8-barrel enzyme fold

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A man-made ATP-binding protein evolved independent of nature causes abnormal growth in bacterial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Evolutionary patterns in the sequence and structure of transfer RNA: a window into early translation and the genetic code

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The origin and evolution of tRNA inferred from phylogenetic analysis of structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The evolutionary history of the structure of 5S ribosomal RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The ancient history of the structure of ribonuclease P and the early origins of Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Crystal structure of the termination module of a nonribosomal peptide synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A 'periodic table' for protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Evolutionary transitions in protein fold space

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Small-molecule metabolism: an enzyme mosaic

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Functional convergence of two lysyl-tRNA synthetases with unrelated topologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A vacuolar v-t-SNARE complex, the predominant form in vivo and on isolated vacuoles, is disassembled and activated for docking and fusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

AAA proteins. Lords of the ring

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Molecular self-assembly of surfactant-like peptides to form nanotubes and nanovesicles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The structure and mechanism of the Mycobacterium tuberculosis cyclodityrosine synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Binding and disruption of phospholipid bilayers by supramolecular RNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The crystal structure of E. coli pantothenate synthetase confirms it as a member of the cytidylyltransferase superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A novel main-chain anion-binding site in proteins: the nest. A particular combination of phi,psi values in successive residues gives rise to anion-binding sites that occur commonly and are found often at functionally important regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Substrate-assisted catalysis of peptide bond formation by the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

AAA+ ATPases: achieving diversity of function with conserved machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Transmembrane helices before, during, and after insertion

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

tRNA Creation by Hairpin Duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Phylogeny determined by protein domain content

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

RecA-like motor ATPases--lessons from structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

On the origin and highly likely completeness of single-domain protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Structures of the ribosome in intermediate states of ratcheting

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Conformational Switches Modulate Protein Interactions in Peptide Antibiotic Synthetases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The kinetics of enzyme-catalyzed reactions with two or more substrates or products☆I. Nomenclature and rate equations

21 January 2018

1 reference

12 December 2020

Gradual development of protein-like global structures through functional selection

1 reference

12 December 2020

Formal proof that the split genes of tRNAs of Nanoarchaeum equitans are an ancestral character

1 reference

12 December 2020

Getting past the RNA world: the initial Darwinian ancestor

1 reference

12 December 2020

On earlier states of the biochemical system

1 reference

12 December 2020

The first living systems: a bioenergetic perspective

1 reference

12 December 2020

Recurring main-chain anion-binding motifs in short polypeptides: nests.

1 reference

12 December 2020

Aminoacyl thioester chemistry of class II aminoacyl-tRNA synthetases

1 reference

12 December 2020

Exploring the interplay of stability and function in protein evolution: new methods further elucidate why protein stability is necessarily so tenuous and stability-increasing mutations compromise biological function

1 reference

12 December 2020

Functional association between three archaeal aminoacyl-tRNA synthetases

1 reference

12 December 2020

The relation between the divergence of sequence and structure in proteins

1 reference

12 December 2020

Macromolecular assemblage of aminoacyl-tRNA synthetases: quantitative analysis of protein-protein interactions and mechanism of complex assembly

1 reference

12 December 2020

Amino acid selectivity in the aminoacylation of coenzyme A and RNA minihelices by aminoacyl-tRNA synthetases

1 reference

12 December 2020

Global phylogeny determined by the combination of protein domains in proteomes

1 reference

12 December 2020

Ribosomal history reveals origins of modern protein synthesis

1 reference

12 December 2020

Aminoacylation of coenzyme A and pantetheine by aminoacyl-tRNA synthetases: possible link between noncoded and coded peptide synthesis

1 reference

12 December 2020

Concurrent chaperone and protease activities of ClpAP and the requirement for the N-terminal ClpA ATP binding site for chaperone activity

1 reference

12 December 2020

Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria

1 reference

12 December 2020

Exploring the functional robustness of an enzyme by in vitro evolution

1 reference

12 December 2020

Metabolic microspheres: origins and evolution

1 reference

12 December 2020

Mechanism of synthesis of adenosine(5')tetraphospho(5')adenosine (AppppA) by aminoacyl-tRNA synthetases

1 reference

12 December 2020

Membrane protein folding and oligomerization: the two-stage model

1 reference

12 December 2020

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

12 December 2020

Divergent evolution of a Rossmann fold and identification of its oldest surviving ancestor.

1 reference

12 December 2020

Attempts to Map a Process Evolution of Peptide Biosynthesis

1 reference

12 December 2020

Evolution of catalytic proteins or on the origin of enzyme species by means of natural selection

1 reference

12 December 2020

A tale of two synthetases

1 reference

12 December 2020

10.1007/S00239-011-9480-1

Identifiers

DOI

1 reference

12 January 2018

PubMed ID

22210458

1 reference

12 January 2018