Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin (Q30156980)

8 June 2017

Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin (English)

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8 June 2017

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J Söding

5

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author name string

M Remmert

1

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8 June 2017

A Biegert

2

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8 June 2017

D Linke

3

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8 June 2017

A N Lupas

4

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8 June 2017

27 January 2010

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Molecular Biology and Evolution

8 June 2017

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8 June 2017

27

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8 June 2017

6

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8 June 2017

1348-1358

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On the origin of the histone fold

8 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Cradle-loop barrels and the concept of metafolds in protein classification by natural descent.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Crystal structure of the long-chain fatty acid transporter FadL.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

De novo identification of highly diverged protein repeats by probabilistic consistency.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Predicting transmembrane beta-barrels in proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

The Envelope of Mycobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Isolation and characterization of Halothermothrix orenii gen. nov., sp. nov., a halophilic, thermophilic, fermentative, strictly anaerobic bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic cod

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Structure of the membrane protein FhaC: a member of the Omp85-TpsB transporter superfamily.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Common evolutionary origin of swapped-hairpin and double-psi beta barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Sialidase-like Asp-boxes: sequence-similar structures within different protein folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Identification of homology in protein structure classification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Wza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Convergent evolution: the need to be explicit

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Determining divergence times of the major kingdoms of living organisms with a protein clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Solute channels of the outer membrane: from bacteria to chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

The structure of a mycobacterial outer-membrane channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Why do globular proteins fit the limited set of folding patterns?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

CLANS: a Java application for visualizing protein families based on pairwise similarity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Connecting the protein structure universe by using sparse recurring fragments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Two tricks in one bundle: helix-turn-helix gains enzymatic activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

KH domain: one motif, two folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Relics from the RNA world

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Structure and function of bacterial outer membrane proteins: barrels in a nutshell

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Structurally analogous proteins do exist!

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

A tale of two ferredoxins: sequence similarity and structural differences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Evidence for an early prokaryotic endosymbiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Kalign--an accurate and fast multiple sequence alignment algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Protein homologous cores and loops: important clues to evolutionary relationships between structurally similar proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Conserved pore-forming regions in polypeptide-transporting proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

How far divergent evolution goes in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Gibbs motif sampling: detection of bacterial outer membrane protein repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Phylogenetic analysis of general bacterial porins: a phylogenomic case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Prebiotic Chemistry and the Origin of the RNA World

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Evolutionary conservation of biogenesis of beta-barrel membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

High-resolution structure of the OmpA membrane domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Effective protein sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Fiber formation across the bacterial outer membrane by the chaperone/usher pathway

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

HHomp--prediction and classification of outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Assembly factor Omp85 recognizes its outer membrane protein substrates by a species-specific C-terminal motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Discrete-continuous duality of protein structure space.

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Common fold in helix-hairpin-helix proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic, thermophilic, carbon-monoxide-oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Protein homology detection by HMM-HMM comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

The HHpred interactive server for protein homology detection and structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

More than the sum of their parts: on the evolution of proteins from peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

HHrep: de novo protein repeat detection and the origin of TIM barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

HHsenser: exhaustive transitive profile search using HMM-HMM comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Divergent evolution within protein superfolds inferred from profile-based phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Scoring function for automated assessment of protein structure template quality

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

TM-align: a protein structure alignment algorithm based on the TM-score

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation 1 1Edited by F. E. Cohen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ017

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSQ017

1 reference

8 June 2017

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