Ribosomal history reveals origins of modern protein synthesis (Q21134742)

April 2022 Public Data File from Crossref

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12 September 2017

Some reassembly required

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12 September 2017

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12 September 2017

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A signal relay between ribosomal protein S12 and elongation factor EF-Tu during decoding of mRNA.

12 September 2017

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12 September 2017

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The origin and evolution of the ribosome

12 September 2017

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12 September 2017

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12 September 2017

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12 September 2017

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12 September 2017

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Common evolutionary trends for SINE RNA structures

12 September 2017

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Rate, accuracy and cost of ribosomes in bacterial cells

12 September 2017

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Collective evolution and the genetic code

12 September 2017

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Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements

12 September 2017

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12 September 2017

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Divergent evolution within protein superfolds inferred from profile-based phylogenetics

12 September 2017

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Ribosomal proteins in the spotlight

12 September 2017

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The driving force for molecular evolution of translation

12 September 2017

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Biosynthesis of nonribosomal peptides1.

12 September 2017

1 reference

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The Structural Basis of Large Ribosomal Subunit Function

12 September 2017

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Modelling 'evo-devo' with RNA.

12 September 2017

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The accuracy of ribosomal RNA comparative structure models

12 September 2017

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Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3299690

Translation: in retrospect and prospect

12 September 2017

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Ribosome fidelity: tRNA discrimination, proofreading and induced fit.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3299690

Ribosomal protein L2 is involved in the association of the ribosomal subunits, tRNA binding to A and P sites and peptidyl transfer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3299690

Tertiary Motifs in RNA Structure and Folding

12 September 2017

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New evidence for the genomic tag hypothesis: archaeal CCA-adding enzymes and tDNA substrates

12 September 2017

1 reference

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Unusual resistance of peptidyl transferase to protein extraction procedures

12 September 2017

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Translational accuracy and the fitness of bacteria

12 September 2017

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A speculation on the origin of protein synthesis

12 September 2017

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Tracing the evolution of RNA structure in ribosomes

12 September 2017

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Optimization of translation accuracy

27 September 2017

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Constraints on the accuracy of messenger RNA movement

27 September 2017

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SEARCHING FOR EVOLUTIONARY PATTERNS IN THE SHAPE OF A PHYLOGENETIC TREE.

27 September 2017

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Optimizing protein stability in vivo

30 May 2018

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Global stabilization of rRNA structure by ribosomal proteins S4, S17, and S20.

30 May 2018

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A role for the 30S subunit E site in maintenance of the translational reading frame

30 May 2018

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Ribosomal protein L3: gatekeeper to the A site

30 May 2018

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A protein component at the heart of an RNA machine: the importance of protein l27 for the function of the bacterial ribosome

30 May 2018

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Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency

30 May 2018

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Estimating the contributions of selection and self-organization in RNA secondary structure.

30 May 2018

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A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. I. Fitting the RNA to a 3D electron microscopic map at 20 A.

30 May 2018

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A library of RNA bridges.

30 May 2018

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Peeling the onion: ribosomes are ancient molecular fossils.

21 January 2018

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Topology links RNA secondary structure with global conformation, dynamics, and adaptation

21 January 2018

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Identification of nucleotides in E. coli 16S rRNA essential for ribosome subunit association

21 January 2018

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Ribosomal protein structures: insights into the architecture, machinery and evolution of the ribosome.

21 January 2018

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Proteome evolution and the metabolic origins of translation and cellular life

21 January 2018

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Peptidyl transferase activity catalyzed by protein-free 23S ribosomal RNA remains elusive.

21 January 2018

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The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release.

21 January 2018

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Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

21 January 2018

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Reverse translocation of tRNA in the ribosome.

21 January 2018

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Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032776

Grass evolution inferred from chromosomal rearrangements and geometrical and statistical features in RNA structure.

21 January 2018

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Distributions of cherries for two models of trees.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032776

Fast folding and comparison of RNA secondary structures

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032776

An efficient Z-score algorithm for assessing sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032776

Matplotlib: A 2D Graphics Environment

21 January 2018

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Life as a manifestation of the second law of thermodynamics

21 January 2018

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The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis

21 January 2018

1 reference

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Key transitions during the evolution of animal phototransduction: novelty, "tree-thinking," co-option, and co-duplication

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3299690

Growth-optimizing accuracy of gene expression

29 November 2018

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12 December 2020

Ribosomal protein neighborhoods. 3. Cooperativity of assembly

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12 December 2020

Continuity in evolution: on the nature of transitions

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12 December 2020

Compact and ordered collapse of randomly generated RNA sequences

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12 December 2020

Evolved RNA secondary structure and the rooting of the universal tree of life

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12 December 2020

A thermodynamic theory of evolution

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12 December 2020

Exploring the interplay of stability and function in protein evolution: new methods further elucidate why protein stability is necessarily so tenuous and stability-increasing mutations compromise biological function

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12 December 2020

Molecular Mechanics of Translation : a Reciprocating Ratchet Mechanism

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12 December 2020

On the thermodynamics of biological evolution

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12 December 2020

Global phylogeny determined by the combination of protein domains in proteomes

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12 December 2020

One sequence, two ribozymes: implications for the emergence of new ribozyme folds

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12 December 2020

PATTERNS IN PHYLOGENETIC TREE BALANCE WITH VARIABLE AND EVOLVING SPECIATION RATES

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12 December 2020

Peptide bond formation is all about proximity

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12 December 2020

10.1371/JOURNAL.PONE.0032776

Identifiers

DOI

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1026635

ADS bibcode

2012PLoSO...732776H

0 references

OpenCitations bibliographic resource ID

1026635

1 reference