MicroRNAs and complex diseases: from experimental results to computational models. (Q45944835)

18 December 2017

title

MicroRNAs and complex diseases: from experimental results to computational models. (English)

1 reference

18 December 2017

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Xing Chen

1

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author name string

Di Xie

series ordinal

2

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18 December 2017

Qi Zhao

series ordinal

3

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18 December 2017

Zhu-Hong You

series ordinal

4

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18 December 2017

language of work or name

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17 October 2017

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18 December 2017

Briefings in Bioinformatics

published in

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18 December 2017

From miRNA regulation to miRNA-TF co-regulation: computational approaches and challenges

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21 January 2018

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Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis

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How microRNAs control cell division, differentiation and death

21 January 2018

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MicroRNAs and the regulation of cell death

21 January 2018

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21 January 2018

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Target mimicry provides a new mechanism for regulation of microRNA activity

21 January 2018

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MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells

21 January 2018

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Silencing of microRNAs in vivo with 'antagomirs'

21 January 2018

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MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries

21 January 2018

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MicroRNA-128 inhibits glioma cells proliferation by targeting transcription factor E2F3a

21 January 2018

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MicroRNA-155 is induced during the macrophage inflammatory response

21 January 2018

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Functional aspects of animal microRNAs

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A cellular microRNA mediates antiviral defense in human cells

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Oncomirs - microRNAs with a role in cancer

21 January 2018

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Development of the human cancer microRNA network

21 January 2018

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MicroRNAs: target recognition and regulatory functions

21 January 2018

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21 January 2018

Human MicroRNA targets

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 January 2018

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RNAhybrid: microRNA target prediction easy, fast and flexible

21 January 2018

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DIANA-microT web server: elucidating microRNA functions through target prediction

21 January 2018

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microRNA target predictions across seven Drosophila species and comparison to mammalian targets

21 January 2018

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Computational identification of novel microRNA homologs in the chimpanzee genome

21 January 2018

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Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA

21 January 2018

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A biochemical framework for RNA silencing in plants

21 January 2018

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Biochemical specialization within Arabidopsis RNA silencing pathways

21 January 2018

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In vitro analysis of RNA interference in Drosophila melanogaster.

21 January 2018

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A high-throughput method to monitor the expression of microRNA precursors

21 January 2018

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A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

21 January 2018

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A conformation-induced fluorescence method for microRNA detection

21 January 2018

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Sensitive detection of microRNA in complex biological samples by using two stages DSN-assisted target recycling signal amplification method

21 January 2018

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MicroRNAs: small RNAs with a big role in gene regulation

21 January 2018

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MicroRNA signatures in human cancers

21 January 2018

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miR-133 and miR-30 regulate connective tissue growth factor: implications for a role of microRNAs in myocardial matrix remodeling

21 January 2018

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The microRNAs miR-373 and miR-520c promote tumour invasion and metastasis

21 January 2018

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MicroRNA gene expression deregulation in human breast cancer

21 January 2018

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Emerging role of microRNAs in cardiovascular biology.

21 January 2018

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Prognostic value of mature microRNA-21 and microRNA-205 overexpression in non-small cell lung cancer by quantitative real-time RT-PCR.

21 January 2018

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Prioritizing candidate disease miRNAs by integrating phenotype associations of multiple diseases with matched miRNA and mRNA expression profiles.

21 January 2018

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MicroRNA expression profiling in prostate cancer

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Unique microRNA molecular profiles in lung cancer diagnosis and prognosis

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNA-143 and -145 in colon cancer

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNA expression profiling in human ovarian cancer: miR-214 induces cell survival and cisplatin resistance by targeting PTEN

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miR-137 inhibits the proliferation of lung cancer cells by targeting Cdc42 and Cdk6.

21 January 2018

1 reference

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HMDD v2.0: a database for experimentally supported human microRNA and disease associations

21 January 2018

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Prioritizing cancer-related key miRNA-target interactions by integrative genomics

21 January 2018

1 reference

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Bioinformatics method to predict two regulation mechanism: TF-miRNA-mRNA and lncRNA-miRNA-mRNA in pancreatic cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Comprehensive analysis of the functional microRNA-mRNA regulatory network identifies miRNA signatures associated with glioma malignant progression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Gene expression profiling in whole blood of patients with coronary artery disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNA-206 delays ALS progression and promotes regeneration of neuromuscular synapses in mice

21 January 2018

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A pancreatic islet-specific microRNA regulates insulin secretion

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

The muscle-specific microRNA miR-1 regulates cardiac arrhythmogenic potential by targeting GJA1 and KCNJ2

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2

21 January 2018

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Towards the understanding of microRNA and environmental factor interactions and their relationships to human diseases.

21 January 2018

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miREnvironment database: providing a bridge for microRNAs, environmental factors and phenotypes

21 January 2018

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Prediction of disease-related interactions between microRNAs and environmental factors based on a semi-supervised classifier

21 January 2018

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A microRNA signature of hypoxia

21 January 2018

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A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

A viral microRNA functions as an orthologue of cellular miR-155

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Epstein-Barr virus latent membrane protein 1 induces cellular MicroRNA miR-146a, a modulator of lymphocyte signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

An In Vivo Method to Identify microRNA Targets Not Predicted by Computation Algorithms: p21 Targeting by miR-92a in Cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

An improved method to quantitate mature plant microRNA in biological matrices using modified periodate treatment and inclusion of internal controls

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Recurrence of early stage colon cancer predicted by expression pattern of circulating microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNA profiles discriminate among colon cancer metastasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Global cancer statistics, 2002

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNAs in colorectal cancer metastasis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Stage-dependent differential expression of microRNAs in colorectal cancer: potential role as markers of metastatic disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

The impact of comorbidity upon determinants of outcome in patients with lung cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MiR-145 inhibits cell proliferation of human lung adenocarcinoma by targeting EGFR and NUDT1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MiR-138 inhibits tumor growth through repression of EZH2 in non-small cell lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

A microRNA code for prostate cancer metastasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miR-21: an androgen receptor-regulated microRNA that promotes hormone-dependent and hormone-independent prostate cancer growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Epigenetic deregulation of miR-29a and miR-1256 by isoflavone contributes to the inhibition of prostate cancer cell growth and invasion

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miRNA-34b inhibits prostate cancer through demethylation, active chromatin modifications, and AKT pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Micro-RNA profiling in kidney and bladder cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

An emerging understanding of long noncoding RNAs in kidney cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNAs in renal cell carcinoma: diagnostic implications of serum miR-1233 levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Circulating miR-378 and miR-451 in serum are potential biomarkers for renal cell carcinoma.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Proinflammatory role for let-7 microRNAS in experimental asthma

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

HIV-1 Tat C modulates expression of miRNA-101 to suppress VE-cadherin in human brain microvascular endothelial cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miR-107: a toll-like receptor-regulated miRNA dysregulated in obesity and type II diabetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Association of microRNA expression with microsatellite instability status in colorectal adenocarcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Integrin beta 3 expression is regulated by let-7a miRNA in malignant melanoma.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Biological and prognostic associations of miR-205 and let-7b in breast cancer revealed by in situ hybridization analysis of micro-RNA expression in arrays of archival tumour tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Downregulation of HMGA2 by the pan-deacetylase inhibitor panobinostat is dependent on hsa-let-7b expression in liver cancer cell lines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Overexpression of dicer as a result of reduced let-7 MicroRNA levels contributes to increased cell proliferation of oral cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNA alterations in head and neck squamous cell carcinoma.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNAs and cataracts: correlation among let-7 expression, age and the severity of lens opacity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNA-1 and microRNA-499 downregulate the expression of the ets1 proto-oncogene in HepG2 cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Tumour suppressors miR-1 and miR-133a target the oncogenic function of purine nucleoside phosphorylase (PNP) in prostate cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Methylation mediated silencing of MicroRNA-1 gene and its role in hepatocellular carcinogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNA-1 is a candidate tumor suppressor and prognostic marker in human prostate cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Genome-wide profiling of chromatin signatures reveals epigenetic regulation of MicroRNA genes in colorectal cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MiR-1 downregulation cooperates with MACC1 in promoting MET overexpression in human colon cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Down-regulation of the miR-25 and miR-30d contributes to the development of anaplastic thyroid carcinoma targeting the polycomb protein EZH2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miR-25 targets TNF-related apoptosis inducing ligand (TRAIL) death receptor-4 and promotes apoptosis resistance in cholangiocarcinoma

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

MicroRNA-25 functions as a potential tumor suppressor in colon cancer by targeting Smad7.

21 January 2018

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miRBase: integrating microRNA annotation and deep-sequencing data

21 January 2018

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miRBase: annotating high confidence microRNAs using deep sequencing data

21 January 2018

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IntmiR: a complete catalogue of intronic miRNAs of human and mouse

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miR2Disease: a manually curated database for microRNA deregulation in human disease

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miRGator v2.0 : an integrated system for functional investigation of microRNAs

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miRGen 2.0: a database of microRNA genomic information and regulation

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.

21 January 2018

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miRecords: an integrated resource for microRNA-target interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miRWalk database for miRNA-target interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miRCancer: a microRNA-cancer association database constructed by text mining on literature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miREC: a database of miRNAs involved in the development of endometrial cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

dbDEMC: a database of differentially expressed miRNAs in human cancers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

OncomiRDB: a database for the experimentally verified oncogenic and tumor-suppressive microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

OncomiRdbB: a comprehensive database of microRNAs and their targets in breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

CarcinoPred-EL: Novel models for predicting the carcinogenicity of chemicals using molecular fingerprints and ensemble learning methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Prediction of potential disease-associated microRNAs based on random walk

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

NTSMDA: prediction of miRNA-disease associations by integrating network topological similarity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

A path-based measurement for human miRNA functional similarities using miRNA-disease associations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Prioritizing candidate disease miRNAs by topological features in the miRNA target-dysregulated network: case study of prostate cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Prediction of microRNAs associated with human diseases based on weighted k most similar neighbors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Prediction of miRNA-disease associations with a vector space model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

Short non-coding RNA biology and neurodegenerative disorders: novel disease targets and therapeutics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miREFRWR: a novel disease-related microRNA-environmental factor interactions prediction method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

miChip: an array-based method for microRNA expression profiling using locked nucleic acid capture probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

The role of miRNAs in the development of prostate cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX130

21 January 2018

Identifiers

DOI

10.1093/BIB/BBX130

1 reference

18 December 2017

DBLP publication ID

journals/bib/ChenXZY19

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

18 December 2017