Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length (Q34046409)

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14 February 2020

title

Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length (English)

1 reference

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14 February 2020

1 reference

1 reference

2

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14 February 2020

Stephen Kwok-Wing Tsui

8

1 reference

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14 February 2020

Tingfung Chan

9

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14 February 2020

author name string

Shao-Ke Lou

1

1 reference

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14 February 2020

Hao Qin

3

1 reference

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14 February 2020

Aldrin Kay-Yuen Yim

4

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14 February 2020

Leung-Yau Lo

5

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14 February 2020

Bing Ni

6

1 reference

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14 February 2020

Kwong-Sak Leung

7

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14 February 2020

publication date

27 July 2011

1 reference

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14 February 2020

1 reference

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14 February 2020

volume

12 Suppl 5

1 reference

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14 February 2020

page(s)

S2

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https://scigraph.springernature.com/pub.10.1186/1471-2105-12-s5-s2

14 February 2020

exact match

0 references

cites work

ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Supersplat--spliced RNA-seq alignment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Global and unbiased detection of splice junctions from RNA-seq data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

A statistical method for the detection of alternative splicing using RNA-seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

RNA-Seq gene expression estimation with read mapping uncertainty

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

The UCSC Genome Browser database: update 2010

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Fast and accurate short read alignment with Burrows-Wheeler transform

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

TopHat: discovering splice junctions with RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Annotating genomes with massive-scale RNA sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

ASD: a bioinformatics resource on alternative splicing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Understanding alternative splicing: towards a cellular code

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

A computational analysis of sequence features involved in recognition of short introns

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Prediction of complete gene structures in human genomic DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226252

Modeling the feasibility of whole genome shotgun sequencing using a pairwise end strategy.

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-12-S5-S2

10.1186/1471-2105-12-S5-S2

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988959%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/LouLQYLNLTC11

14 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988959%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference