Understanding alternative splicing: towards a cellular code (Q29615085)

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15956978

alternative mRNA splicing, via spliceosome

30 April 2017

main subject

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Matlin AJ

1

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15956978

30 April 2017

Clark F

series ordinal

2

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15956978

30 April 2017

Smith CW

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3

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30 April 2017

publication date

May 2005

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15956978

30 April 2017

language of work or name

1 reference

Nature Reviews Molecular Cell Biology

30 April 2017

published in

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30 April 2017

volume

6

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30 April 2017

issue

5

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30 April 2017

page(s)

386-98

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publication type of scholarly work

30 April 2017

review article

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Listening to silence and understanding nonsense: exonic mutations that affect splicing

Europe PubMed Central

cites work

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Pre-mRNA splicing and human disease

1 May 2017

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A genomic view of alternative splicing

1 May 2017

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Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

1 May 2017

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Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

1 May 2017

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Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

1 May 2017

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Alternative splicing of Drosophila Dscam generates axon guidance receptors that exhibit isoform-specific homophilic binding

1 May 2017

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Nova-1 regulates neuron-specific alternative splicing and is essential for neuronal viability

1 May 2017

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Alternative pre-mRNA splicing: the logic of combinatorial control

1 May 2017

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Sorting out the complexity of SR protein functions

1 May 2017

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ASF/SF2-regulated CaMKIIdelta alternative splicing temporally reprograms excitation-contraction coupling in cardiac muscle

1 May 2017

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hnRNP complexes: composition, structure, and function

1 May 2017

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Messenger-RNA-binding proteins and the messages they carry

1 May 2017

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An extensive network of coupling among gene expression machines

1 May 2017

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The SRm160/300 splicing coactivator is required for exon-enhancer function

1 May 2017

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The SRm160/300 splicing coactivator subunits

1 May 2017

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Specific interactions between proteins implicated in splice site selection and regulated alternative splicing

1 May 2017

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HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats

1 May 2017

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The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site

1 May 2017

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The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing

1 May 2017

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The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites

1 May 2017

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TIA-1 and TIAR activate splicing of alternative exons with weak 5' splice sites followed by a U-rich stretch on their own pre-mRNAs

1 May 2017

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U1 snRNP-dependent function of TIAR in the regulation of alternative RNA processing of the human calcitonin/CGRP pre-mRNA

1 May 2017

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Coordinate repression of a trio of neuron-specific splicing events by the splicing regulator PTB

1 May 2017

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Multisite RNA binding and release of polypyrimidine tract binding protein during the regulation of c-src neural-specific splicing

1 May 2017

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Splicing regulation at the second catalytic step by Sex-lethal involves 3' splice site recognition by SPF45

1 May 2017

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Identification and characterization of a novel serine-arginine-rich splicing regulatory protein

1 May 2017

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Regulation of Alternative Splicing by SRrp86 and Its Interacting Proteins

1 May 2017

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The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing

1 May 2017

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Mechanisms of alternative pre-messenger RNA splicing

1 May 2017

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Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein

1 May 2017

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CLIP identifies Nova-regulated RNA networks in the brain

1 May 2017

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A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing

1 May 2017

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Finding signals that regulate alternative splicing in the post-genomic era

1 May 2017

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ESEfinder: A web resource to identify exonic splicing enhancers

1 May 2017

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Predictive identification of exonic splicing enhancers in human genes

1 May 2017

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The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons

1 May 2017

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Variation in alternative splicing across human tissues

1 May 2017

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Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses

1 May 2017

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Crystal structure of a Pumilio homology domain

1 May 2017

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Exon Identity Established through Differential Antagonism between Exonic Splicing Silencer-Bound hnRNP A1 and Enhancer-Bound SR Proteins

1 May 2017

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Pre-mRNA splicing: awash in a sea of proteins

1 May 2017

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Alternative splicing: multiple control mechanisms and involvement in human disease

31 March 2020

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Genomic variants in exons and introns: identifying the splicing spoilers

31 March 2020

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Conservation of human alternative splice events in mouse

31 March 2020

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Alternative splicing of conserved exons is frequently species-specific in human and mouse

31 March 2020

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Low conservation of alternative splicing patterns in the human and mouse genomes.

31 March 2020

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Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

31 March 2020

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A computational and experimental approach toward a priori identification of alternatively spliced exons

31 March 2020

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Intronic sequences flanking alternatively spliced exons are conserved between human and mouse

31 March 2020

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A non-EST-based method for exon-skipping prediction

31 March 2020

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Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human

31 March 2020

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Generation of recognition diversity in the nervous system

31 March 2020

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Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation

31 March 2020

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Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology

31 March 2020

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Cell signalling and the control of pre-mRNA splicing.

31 March 2020

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Signals and their transduction pathways regulating alternative splicing: a new dimension of the human genome

31 March 2020

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How did alternative splicing evolve?

31 March 2020

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Systematic identification and analysis of exonic splicing silencers.

31 March 2020

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Computational definition of sequence motifs governing constitutive exon splicing.

31 March 2020

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The SR protein B52/SRp55 is essential for Drosophila development

31 March 2020

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Targeted disruption of an essential vertebrate gene: ASF/SF2 is required for cell viability

31 March 2020

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Blastocyst formation is blocked in mouse embryos lacking the splicing factor SRp20.

31 March 2020

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Dilated cardiomyopathy caused by tissue-specific ablation of SC35 in the heart

31 March 2020

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A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly

31 March 2020

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Arginine-serine-rich domains bound at splicing enhancers contact the branchpoint to promote prespliceosome assembly

31 March 2020

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Differential binding of heterogeneous nuclear ribonucleoproteins to mRNA precursors prior to spliceosome assembly in vitro

31 March 2020

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Influence of RNA secondary structure on the pre-mRNA splicing process

31 March 2020

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Mutually exclusive splicing of alpha-tropomyosin exons enforced by an unusual lariat branch point location: implications for constitutive splicing

31 March 2020

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Multiple links between transcription and splicing

31 March 2020

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Synergistic interactions between two distinct elements of a regulated splicing enhancer

31 March 2020

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Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer

31 March 2020

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A splicing enhancer exhibits both constitutive and regulated activities

31 March 2020

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The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing

31 March 2020

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Molecular genetic analysis of the heterodimeric splicing factor U2AF: the RS domain on either the large or small Drosophila subunit is dispensable in vivo

31 March 2020

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Pre-mRNA splicing of IgM exons M1 and M2 is directed by a juxtaposed splicing enhancer and inhibitor

31 March 2020

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Distinct factor requirements for exonic splicing enhancer function and binding of U2AF to the polypyrimidine tract

31 March 2020

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Regulation of Sex-Specific Selection of fruitless 5′ Splice Sites by transformerand transformer-2

31 March 2020

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Enhancer-dependent 5'-splice site control of fruitless pre-mRNA splicing.

31 March 2020

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A protein interaction domain contacts RNA in the prespliceosome

31 March 2020

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Polypyrimidine tract binding protein antagonizes exon definition

31 March 2020

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The protein Sex-lethal antagonizes the splicing factor U2AF to regulate alternative splicing of transformer pre-mRNA.

31 March 2020

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Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins

31 March 2020

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Polypyrimidine tract binding protein functions as a repressor to regulate alternative splicing of alpha-actinin mutally exclusive exons

31 March 2020

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RNAi-mediated PTB depletion leads to enhanced exon definition

31 March 2020

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The Sex-lethal amino terminus mediates cooperative interactions in RNA binding and is essential for splicing regulation.

31 March 2020

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Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2

31 March 2020

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Selection of alternative 5' splice sites: role of U1 snRNP and models for the antagonistic effects of SF2/ASF and hnRNP A1.

31 March 2020

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Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors

31 March 2020

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The MKK(3/6)-p38-signaling cascade alters the subcellular distribution of hnRNP A1 and modulates alternative splicing regulation

31 March 2020

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Modulation of exon skipping by high-affinity hnRNP A1-binding sites and by intron elements that repress splice site utilization

31 March 2020

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hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer

31 March 2020

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The hnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element.

31 March 2020

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Reprogramming Alternative Pre-messenger RNA Splicing through the Use of Protein-binding Antisense Oligonucleotides

31 March 2020

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A stem structure in fibroblast growth factor receptor 2 transcripts mediates cell-type-specific splicing by approximating intronic control elements

31 March 2020

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Regulation of adenovirus alternative RNA splicing by dephosphorylation of SR proteins

31 March 2020

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Human splicing factor ASF/SF2 encodes for a repressor domain required for its inhibitory activity on pre-mRNA splicing

31 March 2020

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The adenovirus E4-ORF4 splicing enhancer protein interacts with a subset of phosphorylated SR proteins.

31 March 2020

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A single polypyrimidine tract binding protein (PTB) binding site mediates splicing inhibition at mouse IgM exons M1 and M2.

31 March 2020

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Modulation of P-element pre-mRNA splicing by a direct interaction between PSI and U1 snRNP 70K protein.

31 March 2020

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Polypyrimidine track-binding protein binding downstream of caspase-2 alternative exon 9 represses its inclusion

31 March 2020

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The splicing factor SRp20 modifies splicing of its own mRNA and ASF/SF2 antagonizes this regulation

31 March 2020

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Antagonism between RSF1 and SR proteins for both splice-site recognition in vitro and Drosophila development.

31 March 2020

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Recognition of exonic splicing enhancer sequences by the Drosophila splicing repressor RSF1

31 March 2020

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Dynamic antagonism between ETR-3 and PTB regulates cell type-specific alternative splicing

31 March 2020

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Region-specific alternative splicing in the nervous system: implications for regulation by the RNA-binding protein NAPOR.

31 March 2020

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Regulation of alternative splicing of alpha-actinin transcript by Bruno-like proteins

31 March 2020

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Antagonistic regulation of alpha-actinin alternative splicing by CELF proteins and polypyrimidine tract binding protein

31 March 2020

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Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1.

31 March 2020

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Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression

31 March 2020

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Determinants of SR protein specificity.

31 March 2020

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A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG.

31 March 2020

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Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing

31 March 2020

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Exonic splicing enhancer motif recognized by human SC35 under splicing conditions

31 March 2020

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Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

31 March 2020

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Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences

31 March 2020

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Selection of novel exon recognition elements from a pool of random sequences

31 March 2020

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Identification of a new class of exonic splicing enhancers by in vivo selection

31 March 2020

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The RNA binding protein YB-1 binds A/C-rich exon enhancers and stimulates splicing of the CD44 alternative exon v4.

31 March 2020

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Comparison of intron-containing and intron-lacking human genes elucidates putative exonic splicing enhancers

31 March 2020

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Variation in sequence and organization of splicing regulatory elements in vertebrate genes

31 March 2020

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Conserved sequence elements associated with exon skipping

31 March 2020

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Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

31 March 2020

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Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs.

31 March 2020

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The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo

31 March 2020

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Specific SR protein-dependent splicing substrates identified through genomic SELEX.

31 March 2020

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A systems view of mRNP biology

31 March 2020

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Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast

31 March 2020

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Functional characterization of SR and SR-related genes in Caenorhabditis elegans

31 March 2020

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SC35 plays a role in T cell development and alternative splicing of CD45.

31 March 2020

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SRprises along a messenger's journey

31 March 2020

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Alternative splicing microarrays reveal functional expression of neuron-specific regulators in Hodgkin lymphoma cells.

31 March 2020

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Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform

31 March 2020

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Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay

31 March 2020

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Identification of alternative splicing regulators by RNA interference in Drosophila

31 March 2020

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Commitment to splice site pairing coincides with A complex formation

31 March 2020

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Exon recognition in vertebrate splicing

31 March 2020

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A two-step mechanism for 5' and 3' splice-site pairing

31 March 2020

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Reversible cross-linking combined with immunoprecipitation to study RNA-protein interactions in vivo

31 March 2020

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Gene structure-based splice variant deconvolution using a microarray platform

31 March 2020

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Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity

31 March 2020

1 reference

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31 March 2020

Identifiers

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30 April 2017

Consolidated OpenCitations Corpus – April 2017

Dimensions publication ID

1006009626

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1 reference

Consolidated OpenCitations Corpus – April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15956978

PubMed publication ID

2 references

30 April 2017

Consolidated OpenCitations Corpus – April 2017