Annotating genomes with massive-scale RNA sequencing (Q24649726)

9

0 references

Jean-Marc Aury

2

0 references

Corinne Da Silva

3

0 references

Olivier Jaillon

11

0 references

Claude Scarpelli

10

0 references

François Artiguenave

12

0 references

France Denoeud

1

0 references

Benjamin Noel

4

0 references

Odile Rogier

object named as

Odile Rogier

5

0 references

Giorgio Valle

object named as

Giorgio Valle

8

0 references

Corinne Da Silva

1 reference

ORCID Public Data File 2021

Michele Morgante

7

object named as

Michele Morgante

0 references

author name string

Massimo Delledonne

https://scigraph.springernature.com/pub.10.1186/gb-2008-9-12-r175

6

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language of work or name

English

0 references

publication date

2008

0 references

published in

Genome Biology

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volume

9

0 references

page(s)

R175

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issue

12

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exact match

0 references

cites work

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ZOOM! Zillions of oligos mapped

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Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

7 April 2017

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

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The transcriptional landscape of the yeast genome defined by RNA sequencing

7 April 2017

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 April 2017

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SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

7 April 2017

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

7 April 2017

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EGASP: the human ENCODE Genome Annotation Assessment Project

7 April 2017

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Automated generation of heuristics for biological sequence comparison

7 April 2017

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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

7 April 2017

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Gene finding in novel genomes

7 April 2017

1 reference

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7 April 2017

GeneWise and Genomewise

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BLAT—The BLAST-Like Alignment Tool

7 April 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 April 2017

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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

7 April 2017

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7 April 2017

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

7 April 2017

1 reference

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SOAP: short oligonucleotide alignment program

7 April 2017

1 reference

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Tag-based approaches for transcriptome research and genome annotation

7 April 2017

1 reference

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Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

7 April 2017

1 reference

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Serial analysis of gene expression

7 April 2017

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A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

7 April 2017

1 reference

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

7 April 2017

1 reference

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

7 April 2017

1 reference

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The universal protein resource (UniProt)

7 April 2017

1 reference

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Genome-wide transcription and the implications for genomic organization

7 April 2017

1 reference

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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

7 April 2017

1 reference

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Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

7 April 2017

1 reference

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A computer program for aligning a cDNA sequence with a genomic DNA sequence

7 April 2017

1 reference

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Optimal spliced alignments of short sequence reads

7 April 2017

1 reference

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Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

28 September 2017

1 reference

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MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries

28 September 2017

1 reference

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The new paradigm of flow cell sequencing.

28 September 2017

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

28 September 2017

1 reference

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ALLPATHS: de novo assembly of whole-genome shotgun microreads

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

Mapping translocation breakpoints by next-generation sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

Whole-genome sequencing and assembly with high-throughput, short-read technologies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

ASEtrap: a biological method for speeding up the exploration of spliceomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

Whole-genome sequencing and variant discovery in C. elegans.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

Assembling millions of short DNA sequences using SSAKE.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

28 November 2018

Gene discovery in dbEST.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646279

10.1186/GB-2008-9-12-R175

28 November 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

507785

1016469219

0 references

507785

1 reference

1 reference

1 reference