Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research (Q28678654)

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3 March 2020

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Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research (English)

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physiological phenomenon

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3 March 2020

Hon-Ming Lam

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4

1 reference

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3 March 2020

author name string

Xinpeng Qi

series ordinal

2

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Meng Ni

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language of work or name

English

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publication date

29 May 2013

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International Journal of Molecular Sciences

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20 August 2019

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3 March 2020

page(s)

11444-11483

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3 March 2020

issue

6

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Creative Commons Attribution

3 March 2020

copyright license

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GigaDB: announcing the GigaScience database

1 reference

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Draft genome of the wheat A-genome progenitor Triticum urartu

17 March 2017

1 reference

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Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

17 March 2017

1 reference

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The BioGRID interaction database: 2013 update

17 March 2017

1 reference

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ArrayExpress update--trends in database growth and links to data analysis tools

17 March 2017

1 reference

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Analysis of the bread wheat genome using whole-genome shotgun sequencing

17 March 2017

1 reference

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PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants

17 March 2017

1 reference

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A physical, genetic and functional sequence assembly of the barley genome

17 March 2017

1 reference

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BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

17 March 2017

1 reference

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Integrated metabolo-proteomic approach to decipher the mechanisms by which wheat QTL (Fhb1) contributes to resistance against Fusarium graminearum

17 March 2017

1 reference

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Comparison of next-generation sequencing systems

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Transcript profile of the response of two soybean genotypes to potassium deficiency

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

MetaboSearch: tool for mass-based metabolite identification using multiple databases

17 March 2017

1 reference

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Fast gapped-read alignment with Bowtie 2

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Multi-dimensional regulation of metabolic networks shaping plant development and performance

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Database resources of the National Center for Biotechnology Information

17 March 2017

1 reference

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The IntAct molecular interaction database in 2012

17 March 2017

1 reference

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InterPro in 2011: new developments in the family and domain prediction database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

SMART 7: recent updates to the protein domain annotation resource

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The Histone Database: an integrated resource for histones and histone fold-containing proteins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

MaizeGDB: curation and outreach go hand-in-hand

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

HMMER web server: interactive sequence similarity searching

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Full-length transcriptome assembly from RNA-Seq data without a reference genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Towards establishment of a rice stress response interactome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The genome of woodland strawberry (Fragaria vesca)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The European Nucleotide Archive

17 March 2017

1 reference

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RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

MassBank: a public repository for sharing mass spectral data for life sciences

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The Pfam protein families database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Infernal 1.0: inference of RNA alignments

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

TopHat: discovering splice junctions with RNA-Seq

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The Sorghum bicolor genome and the diversification of grasses

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

KEGG for linking genomes to life and the environment

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

High-resolution profiling of histone methylations in the human genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The Sequence Ontology: a tool for the unification of genome annotations

17 March 2017

1 reference

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The Legume Information System (LIS): an integrated information resource for comparative legume biology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

17 March 2017

1 reference

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Plant pathogens and integrated defence responses to infection

17 March 2017

1 reference

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

17 March 2017

1 reference

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Protein-protein interactions define specificity in signal transduction

17 March 2017

1 reference

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Gene ontology: tool for the unification of biology

17 March 2017

1 reference

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The language of covalent histone modifications

17 March 2017

1 reference

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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

17 March 2017

1 reference

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Quantitative monitoring of gene expression patterns with a complementary DNA microarray

17 March 2017

1 reference

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Basic local alignment search tool

17 March 2017

1 reference

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KEGG for integration and interpretation of large-scale molecular data sets

17 March 2017

1 reference

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Cytoscape 2.8: new features for data integration and network visualization

7 April 2017

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

7 April 2017

1 reference

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

7 April 2017

1 reference

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Genome-wide mapping of in vivo protein-DNA interactions

7 April 2017

1 reference

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VISTA: computational tools for comparative genomics

7 April 2017

1 reference

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Phytozome: a comparative platform for green plant genomics

7 April 2017

1 reference

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

7 April 2017

1 reference

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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

7 April 2017

1 reference

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RNA sequencing: advances, challenges and opportunities

7 April 2017

1 reference

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Histone acetyltransferase complexes: one size doesn't fit all

7 April 2017

1 reference

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Prediction of total genetic value using genome-wide dense marker maps

7 April 2017

1 reference

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Ab initio gene finding in Drosophila genomic DNA

7 April 2017

1 reference

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Plant immunity: towards an integrated view of plant-pathogen interactions

7 April 2017

1 reference

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A predicted protein interactome for rice

9 May 2017

1 reference

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Genome-wide analysis of NBS-encoding disease resistance genes in Cucumis sativus and phylogenetic study of NBS-encoding genes in Cucurbitaceae crops

3 June 2018

1 reference

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Plant secretome proteomics

3 June 2018

1 reference

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Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics

3 June 2018

1 reference

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GBSA: a comprehensive software for analysing whole genome bisulfite sequencing data.

3 June 2018

1 reference

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Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress

3 June 2018

1 reference

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Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.).

3 June 2018

1 reference

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Genome-wide comparative analysis of annexin superfamily in plants

3 June 2018

1 reference

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Genome-wide identification and characterization of R2R3MYB family in Cucumis sativus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Proteomic analysis of grapevine resistance induced by Trichoderma harzianum T39 reveals specific defence pathways activated against downy mildew

3 June 2018

1 reference

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Proteomics reveals the effects of salicylic acid on growth and tolerance to subsequent drought stress in wheat

3 June 2018

1 reference

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Genome-wide identification and expression profiling of dehydrin gene family in Malus domestica

3 June 2018

1 reference

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Proteins linked to drought tolerance revealed by DIGE analysis of drought resistant and susceptible barley varieties.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

An accelerated workflow for untargeted metabolomics using the METLIN database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Transcriptome analysis of rice root responses to potassium deficiency

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Transgenerational defense induction and epigenetic inheritance in plants.

3 June 2018

1 reference

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The draft genome of a diploid cotton Gossypium raimondii

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Comparative transcriptome profiling of chilling stress responsiveness in two contrasting rice genotypes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

FT-ICR/MS and GC-EI/MS metabolomics networking unravels global potato sprout's responses to Rhizoctonia solani infection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide identification of genes involved in raffinose metabolism in Maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The dynamic changes of DNA methylation and histone modifications of salt responsive transcription factor genes in soybean

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Identification and in silico characterization of soybean trihelix-GT and bHLH transcription factors involved in stress responses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

CCCH-type zinc finger family in maize: genome-wide identification, classification and expression profiling under abscisic acid and drought treatments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of the MYB transcription factor superfamily in soybean.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The genome of melon (Cucumis melo L.).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Widespread dynamic DNA methylation in response to biotic stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The physiology and proteomics of drought tolerance in maize: early stomatal closure as a cause of lower tolerance to short-term dehydration?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Metabolite profiles of rice cultivars containing bacterial blight-resistant genes are distinctive from susceptible rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Metabolite adjustments in drought tolerant and sensitive soybean genotypes in response to water stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The secreted plant N-glycoproteome and associated secretory pathways

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Comparative population genomics of maize domestication and improvement

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Identification and profiling of salinity stress-responsive proteins in Sorghum bicolor seedlings.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Will genomic selection be a practical method for plant breeding?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Comparative proteome analysis of high and low cadmium accumulating soybeans under cadmium stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

A novel mesh processing based technique for 3D plant analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Comparative proteome analysis of drought-sensitive and drought-tolerant rapeseed roots and their hybrid F1 line under drought stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Label-free quantitative proteomics reveals differentially regulated proteins in the latex of sticky diseased Carica papaya L. plants.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Proteomic analysis of ripening tomato fruit infected by Botrytis cinerea

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Physiological and proteomic responses of cotton (Gossypium herbaceum L.) to drought stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

In silico archeogenomics unveils modern plant genome organisation, regulation and evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Molecular phylogenetic and expression analysis of the complete WRKY transcription factor family in maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

From climate change to molecular response: redox proteomics of ozone-induced responses in soybean.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Physiological and proteomic approaches to address the active role of ozone in kiwifruit post-harvest ripening

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Organ-specific proteomic analysis of drought-stressed soybean seedlings

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Proteomics analysis reveals multiple regulatory mechanisms in response to selenium in rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Metabolic and phenotypic responses of greenhouse-grown maize hybrids to experimentally controlled drought stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Comparative proteomic analysis of seedling leaves of different salt tolerant soybean genotypes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Identification of hypoxic-responsive proteins in cucumber roots using a proteomic approach

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Drought-responsive mechanisms in rice genotypes with contrasting drought tolerance during reproductive stage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Mass spectrometry-based analysis of proteomic changes in the root tips of flooded soybean seedlings.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Effects of abiotic stress on plants: a systems biology perspective

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Comparative proteomic analysis of grain development in two spring wheat varieties under drought stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Shotgun proteomic analysis of long-distance drought signaling in rice roots.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of WRKY gene family in Cucumis sativus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Evidence for network evolution in an Arabidopsis interactome map.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide expression quantitative trait loci (eQTL) analysis in maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Expression level polymorphisms: heritable traits shaping natural variation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of the beta-glucosidase gene family in maize (Zea mays L. var B73).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

PRIN: a predicted rice interactome network

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Signal transduction during cold, salt, and drought stresses in plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Towards characterization of the glycoproteome of tomato (Solanum lycopersicum) fruit using Concanavalin A lectin affinity chromatography and LC-MALDI-MS/MS analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Accurate inference of shoot biomass from high-throughput images of cereal plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide identification, classification and analysis of heat shock transcription factor family in maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Application of NMR-based metabolomics to the investigation of salt stress in maize (Zea mays).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Metabolite and mineral analyses of cotton near-isogenic lines introgressed with QTLs for productivity and drought-related traits

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide patterns of genetic variation among elite maize inbred lines

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

De novo assembly and analysis of RNA-seq data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Plant protein-protein interaction network and interactome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Comparative transcriptome analysis of contrasting foxtail millet cultivars in response to short-term salinity stress

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

New phenotyping methods for screening wheat and barley for beneficial responses to water deficit

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of NAC transcription factor family in rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

BS Seeker: precise mapping for bisulfite sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Large-scale prediction of protein-protein interactions from structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genomic selection in plant breeding: from theory to practice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

An eQTL analysis of partial resistance to Puccinia hordei in barley

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

PLAZA: a comparative genomics resource to study gene and genome evolution in plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

SoyBase, the USDA-ARS soybean genetics and genomics database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Plant secretome: unlocking secrets of the secreted proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of genes encoding FK506-binding proteins in rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

BSMAP: whole genome bisulfite sequence MAPping program

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Web server suite for complex mixture analysis by covariance NMR

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Drought stress and tropical maize: QTL-by-environment interactions and stability of QTLs across environments for yield components and secondary traits

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Mass spectrometry tools and metabolite-specific databases for molecular identification in metabolomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

High-throughput genotyping by whole-genome resequencing.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Plant proteomics update (2007-2008): Second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a Barley case study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

The Plant-Associated Microbe Gene Ontology (PAMGO) Consortium: community development of new Gene Ontology terms describing biological processes involved in microbe-host interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Molecular characterization of stress-inducible GmNAC genes in soybean

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Literature-curated protein interaction datasets.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Browsing multidimensional molecular networks with the generic network browser (N-Browse)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Kismeth: analyzer of plant methylation states through bisulfite sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide survey of the RIP domain family in Oryza sativa and their expression profiles under various abiotic and biotic stresses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Multiple models for Rosaceae genomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

QUMA: quantification tool for methylation analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Chlorophyll fluorescence: a probe of photosynthesis in vivo

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

PlantGDB: a resource for comparative plant genomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Boron-toxicity tolerance in barley arising from efflux transporter amplification

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Gramene: a growing plant comparative genomics resource

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

ChromDB: the chromatin database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Plant proteome analysis: a 2006 update

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

LIPID MAPS online tools for lipid research

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide analysis of chromatin status using tiling microarrays

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Transcriptome changes in the phenylpropanoid pathway of Glycine max in response to Pseudomonas syringae infection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Metabolomics technology and bioinformatics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

JIGSAW: integration of multiple sources of evidence for gene prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

A census of mammalian imprinting.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Role of extracytoplasmic leucine rich repeat proteins in plant defence mechanisms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

GMD@CSB.DB: the Golm Metabolome Database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Breeding for high water-use efficiency.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Leucine-rich repeat receptor kinases in plants: structure, function, and signal transduction pathways

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

DDBJ in the stream of various biological data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

A network of rice genes associated with stress response and seed development

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Estimating polygenic effects using markers of the entire genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

GAZE: a generic framework for the integration of gene-prediction data by dynamic programming

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Transcription factors in plant defense and stress responses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709742

Structure-function analysis of the NB-ARC domain of plant disease resistance proteins.

3 June 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

A sodium transporter (HKT7) is a candidate for Nax1, a gene for salt tolerance in durum wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

A rice quantitative trait locus for salt tolerance encodes a sodium transporter.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide association studies of 14 agronomic traits in rice landraces.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide atlas of transcription during maize development.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Comparative transcriptomic analysis of salt adaptation in roots of contrasting Medicago truncatula genotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Identification and verification of redox-sensitive proteins in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Protein-protein binding affinity prediction on a diverse set of structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

The nematode resistance allele at the rhg1 locus alters the proteome and primary metabolism of soybean roots.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Bursts of retrotransposition reproduced in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

High density DNA methylation array with single CpG site resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Orthogonal projections to latent structures discriminant analysis modeling on in situ FT-IR spectral imaging of liver tissue for identifying sources of variability

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Orthogonal projections to latent structures (O-PLS)

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Comprehensive analysis of mitochondria in roots and hypocotyls of soybean under flooding stress using proteomics and metabolomics techniques.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedling

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Transcriptional and metabolic profiling of grape (Vitis vinifera L.) leaves unravel possible innate resistance against pathogenic fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

GC-MS metabolomic differentiation of selected citrus varieties with different sensitivity to citrus huanglongbing.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Alterations in grapevine leaf metabolism upon inoculation with Plasmopara viticola in different time-points

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Comparative metabolic profiling reveals secondary metabolites correlated with soybean salt tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Metabolic fingerprinting of salt-stressed tomatoes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

VirtualPlant: a software platform to support systems biology research.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

The ankyrin repeat gene family in rice: genome-wide identification, classification and expression profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

The receptor-like cytoplasmic kinase (OsRLCK) gene family in rice: organization, phylogenetic relationship, and expression during development and stress

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide analysis of Aux/IAA gene family in Solanaceae species using tomato as a model.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide analysis of the mitogen-activated protein kinase gene family in Solanum lycopersicum

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Systematic analysis and comparison of nucleotide-binding site disease resistance genes in maize.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide analysis of immunophilin FKBP genes and expression patterns in Zea mays.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide analysis and identification of HAK potassium transporter gene family in maize (Zea mays L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

The proteome response of salt-resistant and salt-sensitive barley genotypes to long-term salinity stress.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Protein expression changes during cotton fiber elongation in response to low temperature stress.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Proteomic analysis of berry-sizing effect of GA3 on seedless Vitis vinifera L.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Proteomic analysis of salicylic acid-induced resistance to Magnaporthe oryzae in susceptible and resistant rice

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Proteomic analysis for low and high nitrogen-responsive proteins in the leaves of rice genotypes grown at three nitrogen levels.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

A comparative proteomics analysis in roots of soybean to compatible symbiotic bacteria under flooding stress.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Comparative proteomics analysis reveals the mechanism of pre-harvest seed deterioration of soybean under high temperature and humidity stress

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Proteomic study of low-temperature responses in strawberry cultivars (Fragaria x ananassa) that differ in cold tolerance.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Fusarium verticillioides secretome as a source of auxiliary enzymes to enhance saccharification of wheat straw

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Proteomic analysis on salicylic acid-induced salt tolerance in common wheat seedlings (Triticum aestivum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

GrainGenes 2.0. an improved resource for the small-grains community

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Interaction network of proteins associated with abiotic stress response and development in wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Plant disease detection based on data fusion of hyper-spectral and multi-spectral fluorescence imaging using Kohonen maps

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Metabolomics reveals simultaneous influences of plant defence system and fungal growth in Botrytis cinerea-infected Vitis vinifera cv. Chardonnay berries

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

The influence of the fungal pathogen Mycocentrospora acerina on the proteome and polyacetylenes and 6-methoxymellein in organic and conventionally cultivated carrots (Daucus carota) during post harvest storage

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Ubiquitin/proteasome-mediated proteolysis is involved in the response to flooding stress in soybean roots, independent of oxygen limitation

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Organ-specific proteomics analysis for identification of response mechanism in soybean seedlings under flooding stress

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: The basic concepts

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Metabolite identification via the Madison Metabolomics Consortium Database

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS140611444

Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis

21 January 2018

1 reference

12 December 2020

Genome-wide analysis of BURP domain-containing genes in maize and sorghum

1 reference

12 December 2020

Analysis of response mechanism in soybean under low oxygen and flooding stresses using gel-base proteomics technique

1 reference

12 December 2020

Differential responses of microsomal proteins and metabolites in two contrasting cadmium (Cd)-accumulating soybean cultivars under Cd stress

1 reference

12 December 2020

Quantifying the three main components of salinity tolerance in cereals

1 reference

12 December 2020

Can proteomics retire the western blot?

1 reference

12 December 2020

Proteomic analysis of strawberry leaves infected with Colletotrichum fragariae

1 reference

12 December 2020

Analysis of proteome and frost tolerance in chromosome 5A and 5B reciprocal substitution lines between two winter wheats during long-term cold acclimation

1 reference

12 December 2020

Association genetics in crop improvement

1 reference

12 December 2020

Protein differential expression in the elongating cotton (Gossypium hirsutum L.) fiber under nitrogen stress

1 reference

12 December 2020

Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.).

1 reference

12 December 2020

The thioredoxin gene family in rice: genome-wide identification and expression profiling under different biotic and abiotic treatments

1 reference

12 December 2020

Accuracy of genomic selection in European maize elite breeding populations

1 reference

12 December 2020

Changes in physiology and protein abundance in salt-stressed wheat chloroplasts

1 reference

12 December 2020

Analysis of proteomic changes in roots of soybean seedlings during recovery after flooding

1 reference

12 December 2020

Proteomics of desiccation tolerance during development and germination of maize embryos

1 reference

12 December 2020

Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods

1 reference

12 December 2020

Methyl jasmonate responsive proteins in Brassica napus guard cells revealed by iTRAQ-based quantitative proteomics

1 reference

12 December 2020

Differential phosphorylation of thylakoid proteins in mesophyll and bundle sheath chloroplasts from maize plants grown under low or high light

1 reference

12 December 2020

Identifiers

DOI

10.3390/IJMS140611444

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23759993%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23759993%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23759993%20AND%20SRC:MED&resulttype=core&format=json