Genomewide SNP variation reveals relationships among landraces and modern varieties of rice (Q37282412)

19 August 2017

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice (English)

1 reference

19 August 2017

17

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19 August 2017

Georg Zeller

7

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Gunnar Rätsch

Gunnar Rätsch

20

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Kevin L. Childs

Kevin L Childs

2

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Kenneth L McNally

Kenneth L McNally

1

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David J. Mackill

David J Mackill

18

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David R. Cox

14

David R Cox

1 reference

19 August 2017

16

Carlos D Bustamante

1 reference

19 August 2017

Regina Bohnert

3

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19 August 2017

Rebecca M Davidson

4

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19 August 2017

Keyan Zhao

5

1 reference

19 August 2017

Victor J Ulat

6

1 reference

19 August 2017

Richard M Clark

8

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19 August 2017

Douglas R Hoen

9

1 reference

19 August 2017

Thomas E Bureau

10

1 reference

19 August 2017

Renee Stokowski

11

1 reference

19 August 2017

Dennis G Ballinger

12

1 reference

19 August 2017

Kelly A Frazer

13

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19 August 2017

Badri Padhukasahasram

15

1 reference

19 August 2017

Richard M Bruskiewich

19

1 reference

19 August 2017

C Robin Buell

21

1 reference

19 August 2017

Hei Leung

22

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19 August 2017

Jan E Leach

23

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19 August 2017

language of work or name

English

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publication date

13 July 2009

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Proceedings of the National Academy of Sciences of the United States of America

19 August 2017

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19 August 2017

106

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19 August 2017

30

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19 August 2017

12273-12278

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Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Mapping QTLs for seedling characteristics under different water supply conditions in rice (Oryza sativa).

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

The extent of linkage disequilibrium in rice (Oryza sativa L.).

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Recombination and linkage disequilibrium in Arabidopsis thaliana.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

A Markov chain Monte Carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

The molecular genetics of crop domestication

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

The TIGR Rice Genome Annotation Resource: improvements and new features

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Selection under domestication: evidence for a sweep in the rice waxy genomic region

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

The map-based sequence of the rice genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

The pattern of polymorphism in Arabidopsis thaliana

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Whole-genome patterns of common DNA variation in three human populations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Genetic structure and diversity in Oryza sativa L

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Transposable element annotation of the rice genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.).

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Identifying biological themes within lists of genes with EASE

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Green revolution: a mutant gibberellin-synthesis gene in rice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Independent deletions of a pathogen-resistance gene in Brassica and Arabidopsis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

A genome-wide survey of R gene polymorphisms in Arabidopsis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Substitution-rate variation among sites and the estimation of transition bias

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

A sequence-based variation map of 8.27 million SNPs in inbred mouse strains

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Candidate defense genes from rice, barley, and maize and their association with qualitative and quantitative resistance in rice

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718348

Molecular dissection of the genetic relationships of source, sink and transport tissue with yield traits in rice

20 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19597147

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19597147

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The QTL analysis on maternal and endosperm genome and their environmental interactions for characters of cooking quality in rice (Oryza sativa L.).

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19597147

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0900992106

1 reference

19 August 2017

0 references

1 reference

19 August 2017

1 reference