Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks (Q24633890)

3

0 references

Steven Salzberg

8

0 references

Lior Pachter

10

Lior Pachter

0 references

Harold Pimentel

7

Harold Pimentel

0 references

John L. Rinn

John L Rinn

9

0 references

Cole Trapnell

1

Cole Trapnell

0 references

author name string

Adam Roberts

2

0 references

Geo Pertea

4

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Daehwan Kim

5

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David R Kelley

maintained by WikiProject

6

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publication date

March 2012

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language of work or name

0 references

0 references

7

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issue

3

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page(s)

562-78

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WikiProject Software

0 references

cites work

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 April 2017

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

7 April 2017

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7 April 2017

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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The Sequence Alignment/Map format and SAMtools

7 April 2017

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7 April 2017

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Sequence identification of 2,375 human brain genes

7 April 2017

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

7 April 2017

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Genome-wide mapping of in vivo protein-DNA interactions

7 April 2017

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The developmental transcriptome of Drosophila melanogaster

7 April 2017

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

7 April 2017

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Computational methods for transcriptome annotation and quantification using RNA-seq

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Estimation of alternative splicing isoform frequencies from RNA-Seq data

27 September 2017

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Improving RNA-Seq expression estimates by correcting for fragment bias

27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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Statistical inferences for isoform expression in RNA-Seq

27 September 2017

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27 September 2017

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Sequencing technology does not eliminate biological variability

27 September 2017

1 reference

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RNA-Seq gene expression estimation with read mapping uncertainty

30 May 2018

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Identification of novel transcripts in annotated genomes using RNA-Seq

30 May 2018

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28 November 2018

Identifiers

DOI

10.1038/NPROT.2012.016

1 reference

Dimensions publication ID

1030124536

0 references

1 reference

1 reference

PubMed publication ID

22383036

1 reference