Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad (Q28083241)

preventive health services

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biomedical investigative technique

22 July 2019

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19 November 2020

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Toby J. Gibson

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Holger Dinkel

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Kim Van Roey

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Cell Communication and Signaling

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18 November 2015

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22 July 2019

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Creative Commons Attribution 4.0 International

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Cytoscape

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Cytoscape

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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https://scigraph.springernature.com/pub.10.1186/s12964-015-0121-y

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29 September 2017

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29 September 2017

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29 September 2017

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Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Linear motifs: lost in (pre)translation

29 September 2017

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Interactions via intrinsically disordered regions: what kind of motifs?

29 September 2017

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Motif switches: decision-making in cell regulation

29 September 2017

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A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

29 September 2017

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Attributes of short linear motifs.

29 September 2017

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SLiMSearch 2.0: biological context for short linear motifs in proteins

29 September 2017

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Cytosolic aggregates perturb the degradation of nontranslocated secretory and membrane proteins

29 September 2017

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RNA-protein interactions in human health and disease

29 September 2017

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Exploring the spatial and temporal organization of a cell's proteome

29 September 2017

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The LAT story: a tale of cooperativity, coordination, and choreography

29 September 2017

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Decoding signalling networks by mass spectrometry-based proteomics

29 September 2017

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Cell signaling in space and time: where proteins come together and when they're apart

29 September 2017

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29 September 2017

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Cell regulation: determined to signal discrete cooperation

29 September 2017

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29 September 2017

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Protein multiple sequence alignment

29 September 2017

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Understanding eukaryotic linear motifs and their role in cell signaling and regulation.

29 September 2017

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A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

29 September 2017

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LOCATE: a mammalian protein subcellular localization database

29 September 2017

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Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions

29 September 2017

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Local structural disorder imparts plasticity on linear motifs.

29 September 2017

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29 September 2017

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AKAP signaling complexes: getting to the heart of the matter

29 September 2017

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Structural basis for recognition of the T cell adaptor protein SLP-76 by the SH3 domain of phospholipase Cgamma1

29 September 2017

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Structural basis for differential recognition of tyrosine-phosphorylated sites in the linker for activation of T cells (LAT) by the adaptor Gads

29 September 2017

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Dosage sensitivity and the evolution of gene families in yeast

29 September 2017

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Three-dimensional structure of the complex of skeletal muscle actin and bovine pancreatic DNAse I at 6-A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

The ABBA motif binds APC/C activators and is shared by APC/C substrates and regulators

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

SMART: recent updates, new developments and status in 2015.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

Analysis Tool Web Services from the EMBL-EBI.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

iELM--a web server to explore short linear motif-mediated interactions

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

PepSite: prediction of peptide-binding sites from protein surfaces

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

PiSite: a database of protein interaction sites using multiple binding states in the PDB

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

The switches.ELM resource: a compendium of conditional regulatory interaction interfaces

2 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0121-Y

The Human Protein Atlas--a tool for pathology

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0121-Y

Tissue-specific alternative splicing remodels protein-protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0121-Y

Molecular details of Itk activation by prolyl isomerization and phospholigand binding: the NMR structure of the Itk SH2 domain bound to a phosphopeptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0121-Y

Using the KEGG database resource.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652402

A cellular oncogene is translocated to the Philadelphia chromosome in chronic myelocytic leukaemia

27 November 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0121-Y

A chromosome-centric analysis of antibodies directed toward the human proteome using Antibodypedia

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/26581338

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MAFFT: iterative refinement and additional methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/26581338

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/26581338

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12964-015-0121-Y

1 reference

Dimensions Publication ID

1383043

1015281242

0 references

1383043

1 reference

1 reference

1 reference