Minimotif miner 2nd release: a database and web system for motif search (Q24655431)

1

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Sudha Balla

2

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Patrick Gradie

3

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Michael R Gryk

4

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Krishna Kadaveru

5

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Vamsi Kundeti

6

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Mark W Maciejewski

7

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Tian Mi

8

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Nicholas Rubino

9

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Jay Vyas

10

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Martin R Schiller

Viral infection and human disease--insights from minimotifs

11

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language of work or name

English

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publication date

January 2009

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published in

Nucleic Acids Research

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volume

37

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issue

Database issue

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page(s)

D185-90

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

MEROPS: the peptidase database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Proteasomes and ubiquitin are involved in the turnover of the wild-type prion protein

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

CDD: a curated Entrez database of conserved domain alignments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Recent improvements to the SMART domain-based sequence annotation resource

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

The PROSITE database, its status in 2002

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Pfam 10 years on: 10,000 families and still growing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Minimotif Miner: a tool for investigating protein function

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

PDZBase: a protein-protein interaction database for PDZ-domains

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

The tyrosine kinase inhibitor STI571 induces cellular clearance of PrPSc in prion-infected cells.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

CDART: protein homology by domain architecture

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Dictionary-driven protein annotation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Membrane topology influences N-glycosylation of the prion protein

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Probing the NADPH-binding site of Escherichia coli flavodoxin oxidoreductase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Increased coverage of protein families with the blocks database servers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Database resources of the National Center for Biotechnology Information.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

PhosphoBase, a database of phosphorylation sites: release 2.0.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Fatal familial insomnia and familial Creutzfeldt-Jakob disease: disease phenotype determined by a DNA polymorphism

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Clustering of cellular prion protein induces ERK1/2 and stathmin phosphorylation in GT1-7 neuronal cells.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

CoPS: Comprehensive Peptide Signature database.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Identification of cryptic nuclear localization signals in the prion protein.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Cellular prion protein sensitizes neurons to apoptotic stimuli through Mdm2-regulated and p53-dependent caspase 3-like activation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686579

Susceptibility of the prion protein to enzymic phosphorylation

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18978024

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The PRINTS Database of Protein Fingerprints: A Novel Information Resource for Computational Molecular Biology

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18978024

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

In vivo selection of engineered homing endonucleases using double-strand break induced homologous recombination

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN865

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN865

1 reference

journals/nar/RajasekaranBGGKKMMRVS09

2458011

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

2458011

1 reference

1 reference

1 reference