A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences (Q33332052)

25 July 2017

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences (English)

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25 July 2017

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2

Alberto Labarga

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25 July 2017

Claudia Chica

1

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Toby J. Gibson

object named as

Toby J Gibson

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5

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Rodrigo López

object named as

Rodrigo López

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4

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Cathryn M Gould

series ordinal

3

object named as

Cathryn M Gould

1 reference

25 July 2017

6 May 2008

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25 July 2017

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25 July 2017

9

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25 July 2017

229

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https://scigraph.springernature.com/pub.10.1186/1471-2105-9-229

25 July 2017

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A new protein linear motif benchmark for multiple sequence alignment software

28 July 2018

1 reference

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Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation

28 July 2018

1 reference

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Characterization of protein hubs by inferring interacting motifs from protein interactions

28 July 2018

1 reference

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SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins.

28 July 2018

1 reference

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Web services at the European bioinformatics institute

28 July 2018

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The SLiMDisc server: short, linear motif discovery in proteins

28 July 2018

1 reference

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UniRef: comprehensive and non-redundant UniProt reference clusters

28 July 2018

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28 July 2018

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Oligomerization of signaling complexes by the multipoint binding of GRB2 to both LAT and SOS1

28 July 2018

1 reference

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DILIMOT: discovery of linear motifs in proteins

28 July 2018

1 reference

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Reading protein modifications with interaction domains

28 July 2018

1 reference

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Minimotif Miner: a tool for investigating protein function

28 July 2018

1 reference

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28 July 2018

The PROSITE database.

1 reference

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The Universal Protein Resource (UniProt): an expanding universe of protein information

28 July 2018

1 reference

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Structural basis of FFAT motif-mediated ER targeting

28 July 2018

1 reference

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QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns

28 July 2018

1 reference

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IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

28 July 2018

1 reference

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Linear motifs: evolutionary interaction switches.

28 July 2018

1 reference

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Multisite protein modification and intramolecular signaling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

ProbCons: Probabilistic consistency-based multiple sequence alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

PROSITE: a documented database using patterns and profiles as motif descriptors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

A motif-based profile scanning approach for genome-wide prediction of signaling pathways

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

SMART: a web-based tool for the study of genetically mobile domains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

A comprehensive comparison of multiple sequence alignment programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

Improved sensitivity of profile searches through the use of sequence weights and gap excision.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

PROSITE: a dictionary of sites and patterns in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

A computational strategy for the prediction of functional linear peptide motifs in proteins.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

Local structural disorder imparts plasticity on linear motifs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

The EH1 motif in metazoan transcription factors

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

Scoring residue conservation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396637

31 October 2018

Identifiers

DOI

10.1186/1471-2105-9-229

1 reference

journals/bmcbi/ChicaLGLG08

25 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

18460207