Wikidata:WikiProject Chronic Pain/Open data sources

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Here are some open data sources that could be intersting for the project

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Open data sets

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Name	description	main subject	language of work or name	official website	copyright license	file format
100,000 Genomes Project	UK Government project that is sequencing whole genomes from National Health Service patients
3D rRNA modification maps	provides access to the rRNA sequences, secondary structures with modifications sites indicated and 3D modification maps	ribosomal RNA		https://people.biochem.umass.edu/fournierlab/3dmodmap/main.php
3D-Footprint	database of DNA-binding protein structures			http://floresta.eead.csic.es/3dpwm/
3D-Jury	bioinformatics software to aggregate protein structure predictions
3DID	database of three-dimensional interacting domains	protein		http://3did.irbbarcelona.org	proprietary license
3DIV-KOBIC 국가생명연구자원정보센터	Three-dimensional (3D) chromatin structure is an emerging paradigm for understanding gene regulation mechanisms.			https://www.kobic.re.kr/3divv2/
3DSwap: Database of Proteins involved in 3D domain Swapping	Performed in-depth literature curation and structural bioinformatics analyses and developed a curated knowledgebase of proteins involved in 3D domain swapping called '3DSwap			http://caps.ncbs.res.in/3dswap/
4D Nucleome Data Portal Biosource				https://data.4dnucleome.org/search/?type=Biosource
4D Nucleome Data Portal Experiment Replicate	database portal containing replicate experiments of different assays and samples	reproducibility		https://data.4dnucleome.org/search/?type=ExperimentSetReplicate
5S Ribosomal RNA Database	provides information on nucleotide sequences of 5S rRNAs and their genes	5S ribosomal RNA		http://combio.pl/rrna
A Resource for Eukaryotic DNA Replication	The aim is to provide an up to date knowledge base for the eukaryotic DNA replication community.	DNA disease		http://www.dnareplication.net/
AAindex	database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids	amino acid		https://www.genome.jp/aaindex/
ABS: a database of Annotated regulatory Binding Sites from orthologous promoters	database of Annotated regulatory Binding Sites from orthologous promoters	binding site protein family		https://genome.crg.es/datasets/abs2005/	GNU General Public License
ADPriboDB 2.0 The Database of ADP-ribosylated proteins Learn about ADP-ribosylation and search for your protein of interest	ADP-ribosylated proteins and sites			http://adpribodb.adpribodb.org/
AGRICOLA	database serves as the catalog and index for the collections of the United States National Agricultural Library	agriculture	English	https://agricola.nal.usda.gov/
AGRIS Arabidopsis Gene Regulatory Information Server	arabidopsis gene regulatory information server	Arabidopsis gene		https://agris-knowledgebase.org/
ALZGENE - FIELD SYNOPSIS OF GENETIC ASSOCIATION STUDIES IN AD	The AlzGene database aims to provide an unbiased, centralized, publicly available and regularly updated collection of genetic association studies performed on Alzheimer's disease (AD) phenotypes.	Alzheimer's disease		http://www.alzgene.org/
AMIS Plus	the Swiss Myocardial Infarction Registry			http://www.amis-plus.ch/
APID Agile Protein Interactomes DataServer		interactome		http://cicblade.dep.usal.es:8080/APID/init.action
ARAMEMNON	ARAMEMNON is a curated database for Arabidopsis thaliana transmembrane (TM) proteins and transporters.			http://aramemnon.botanik.uni-koeln.de/
ARDB - Antibiotic Resistance Genes Database	biological database			http://ardb.cbcb.umd.edu/
ARED	provides information and distribution of ARE-containing genes, genes with intronic AREs (pre-mRNAs), distribution and characteristics	AU-rich element		https://brp.kfshrc.edu.sa/ARED
AREsite	database of AU-rich elements			http://rna.tbi.univie.ac.at/AREsite
ARKive	non-profit repository of high-quality, high-value media of endangered species		English	http://www.arkive.org/
ARUK-UCL	biological database			https://www.ucl.ac.uk/cardiovascular/research/pre-clinical-and-fundamental-science/functional-gene-annotation/neurological-gene-1
AS-ALPS	database providing information to analyze effect of alternative splicing on protein interaction	alternative mRNA splicing, via spliceosome		https://as-alps.nagahama-i-bio.ac.jp
ASC Active Sequences Collection	ASC (Active Sequences Collection) is a database of short amino acid sequences with known biological activity.			http://bioinformatica.isa.cnr.it/ASC/
ASM Mammal Diversity Database	taxonomic database of living and recently extinct (i.e., since ~1500 CE) species and higher taxa of mammals	mammal taxonomy	English	https://www.mammaldiversity.org/
ASPD (Artificial Selected Proteins/Peptides Database)	is a curated database on selected from randomized pools proteins and peptides.	protein peptide		http://wwwmgs.bionet.nsc.ru/mgs/gnw/aspd/
AVONET	biological database with information about birds
AceDB	database for handling genomic data			http://www.acedb.org/	GNU General Public License GNU Lesser General Public License
AceView Database	The AceView Worm genes Database	worm gene		https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm
Acutelines				https://www.umcg.nl/NL/Zorg/Volwassenen/Deelname_wetenschappelijk_onderzoek/acutelines/Paginas/default.aspx
AddexBio	AddexBio Inovative Tools that Drive Biological and Pharmaceutical Reserch	cell line		https://www.addexbio.com/productshow?id=4
African Plant Database			English French Latin	http://www.ville-ge.ch/musinfo/bd/cjb/africa/index.php?langue=an
AfroMoths				http://www.afromoths.net/
AgBase	online genomic database			http://www.agbase.msstate.edu/
Aging Atlas	database with large gene expression and regulation datasets created by a range of high-throughput omics technologies and serve as a valuable resource for a range of life science researchers.	human ageing		https://ngdc.cncb.ac.cn/aging/index
Alabama Plant Atlas	website and online database about the vascular plants of Alabama	flora plant	English	http://floraofalabama.org/
All of Us	United States NIH research program			https://allofus.nih.gov/
Allele frequency net database	The Allele Frequency Net Database (AFND) provides the scientific community with a freely available repository for the storage of immune gene frequencies in different worldwide populations.	disease		http://www.allelefrequencies.net/
Allen Brain Atlas	Brain cell database and website	brain		http://www.brain-map.org/	free content
Allergome Database	A Database of Allergenic Molecules	allergen		http://www.allergome.org/	Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
Allie	A search service for abbreviations and long forms utilized in Lifesciences			https://allie.dbcls.jp/
Allosteric Database (ASD)	database of proteins			http://mdl.shsmu.edu.cn/ASD/	proprietary license
Alternative splicing and transcript diversity database	2008–2012 European database of transcript variants			http://www.ebi.ac.uk/astd
Alternative splicing annotation project	2003–2013 UCLA database for alternative splicing data			http://www.bioinformatics.ucla.edu/ASAP2
Alzheimers Project at University of Toronto				http://www.ims.utoronto.ca/
American Birding Association	amateur ornithological association, founded 1968			https://www.aba.org/
AmoebaDB	functional genomics database for amoebozoa	Amoeba genomics		http://amoebadb.org/
AmphibiaWeb	database of amphibian species of the world	biological classification Amphibia worldwide conservation biology taxonomy	English	https://amphibiaweb.org/	Creative Commons Attribution-NonCommercial
Amphibian Species of the World	database that provides information of all amphibia species of the world	Amphibia biological classification worldwide bibliography	English	https://amphibiansoftheworld.amnh.org/
Amphibians of India	database online provides infrormation of amphibia species of India	Amphibia taxonomy India biological classification conservation biology	English	http://www.indianamphibians.org/
Anatomography	interactive website accessing anatomical data		Japanese	http://lifesciencedb.jp/bp3d/?lng=en
Animal Diversity Web	online database of animal natural history, distribution, classification, and conservation biology	zoology	English	https://animaldiversity.org	Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
Animal Genome Size Database	catalogue of published genome size estimates for various animal species	genome animal		http://www.genomesize.com/	proprietary license
Animal-eRNAdb	database (Animal-eRNAdb) using RNA-seq data from 5085 samples of 10 species, including chimp, rhesus, mouse, rat, sheep, chicken, frog, zebrafish, fruitfly and worm.			http://gong_lab.hzau.edu.cn/Animal-eRNAdb/
AnimalBase		animal		http://www.animalbase.org
AnimalQTLdb	biological database			https://www.animalgenome.org/cgi-bin/QTLdb/index
AnimalTFDB	animal transcription factor database			http://www.bioguo.org/AnimalTFDB/	free content
AntCat	online taxonomic database about the world's ants	Formicidae	English	https://www.antcat.org/
AntWeb	website documenting the known species of ants	Formicidae nomenclature	English	http://www.antweb.org/	Creative Commons Attribution 4.0 International
AntiJen	kinetic, thermodynamic and cellular database v2.0			http://www.ddg-pharmfac.net/antijen/AntiJen/antijenhomepage.htm#annotations:T_rQYJl1EeytmwPxT6h4kQ
Aphid Species File	online biological database			http://aphid.speciesfile.org/HomePage/Aphid/HomePage.aspx
AphidBase	genomic database for the study of aphids	aphid		http://www.aphidbase.com
ApoHoloDB	provides corresponding pairs of protein structures before and after binding	protein		http://ahdb.ee.ncku.edu.tw
Applied Biological Materials cell line products				https://www.abmgood.com/Cell-Biology.htm
ArachnoServer	manually curated database that provides detailed information about proteinaceous toxins from spiders	Spider toxin		http://www.arachnoserver.org
Araneae online database	Spiders of Europe online database		English German	https://araneae.nmbe.ch/
ArchDB	structural classification of loops extracted from known protein structures	protein structure		http://sbi.imim.es/archdb
Artade				http://omicspace.riken.jp/ARTADE/
Arthropoda Species File	online biological database			http://arthropoda.speciesfile.org/Common/basic/Taxa.aspx?TaxonNameID=1171202
AspicDB	database designed to provide access to reliable annotations of the alternative splicing pattern of human genes			http://srv00.ibbe.cnr.it/ASPicDB/
Assembling the Fungal Tree of Life	Assembling the Fungal Tree of Life Structural and Biochemical Database	fungus		https://aftol.umn.edu/	Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
AtPID	Arabidopsis thaliana protein interaction database	protein Arabidopsis thaliana		http://119.3.41.228/atpid/webfile/
Atlas of Florida Plants				http://florida.plantatlas.usf.edu/
Atlas of UTR Regulatory Activity				http://aura.science.unitn.it
Australasian Pollen and Spore Atlas	collection of pollen and spores information in the Australasian region		English	http://apsa.anu.edu.au/	Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
Australian Faunal Directory	Australian faunal database of taxon names and bibliographic data			https://biodiversity.org.au/afd/home
Australian Fungi ID	Online data base for fungi occurring in Australia		English	https://fungi.biodiversity.org.au/nsl/services/
Australian Lichen	online data base for Lichen occurring in Australia	lichen	English	https://lichen.biodiversity.org.au/nsl/services/
Australian Reptile Online Database	Australian online database			https://www.arod.com.au/arod/
Autism Informatics Portal	AutDB is an evolving database for the autism research community that is centered on genes implicated in autism susceptibility.	autism disease		http://autism.mindspec.org/autdb/WC_About.do
Autophagy Database	Autophagy is a process of self-digestion that occurs in eukaryotic cells.	autophagy disease		http://www.tanpaku.org/autophagy/
Autophagy database				http://tp-apg.genes.nig.ac.jp/autophagy
Aves de Chile	database of the birds of Chile	bird		https://www.avesdechile.cl/
Avibase	database of the birds of the world			http://avibase.bsc-eoc.org/avibase.jsp
BACTIBASE a Database dedicated tobacteriocins	Bacteriocin natural antimicrobial peptides.			http://bactibase.hammamilab.org/main.php
BARCdb	freely available web resource of analytical technology services and products used in biomedical research, listing expertise and molecular resource capabilities available at research centres and biotech companies			http://www.barcdb.org/	free content
BASys	bacterial genome annotation web server			https://www.basys.ca/
BAliBASE4	Benchmark database for comparison of multiple sequence alignments			http://www.lbgi.fr/balibase/
BG Plants: Japanese name–scientific name index (YList)	online database	scientific name common name		http://ylist.info/
BGMUT
BIGNASim	database of structure and analysis portal for nucleic acids simulation data	nucleic acids simulation		http://mmb.irbbarcelona.org/BIGNASim
BISC	Binary subcomplexes in proteins database			http://bisc.cse.ucsc.edu	free content
BNAber	integrated web resource focused on maintaining a comprehensive database of broadly neutralizing HIV-1 antibodies			http://www.bnaber.org/
BRENDA	online database of enzymes			http://www.brenda-enzymes.org/ https://www.brenda-enzymes.org/index.php	proprietary license Creative Commons Attribution 4.0 International
BRENDA Tissue Ontology	provides a comprehensive structured encyclopedia of more than 4600 different anatomical structures, tissues, cell types and cell lines	enzyme tissue		https://www.brenda-enzymes.org	Creative Commons Attribution 4.0 International
BSORF	bacillus subtilis genome database	genome Bacillus subtilis		http://bacillus.genome.jp/
BYKdb				https://bykdb.ibcp.fr/BYKdb/	proprietary license
BacDive	database for standardized bacterial information to mobilize and integrate research data on strain level from diverse sources and make it freely accessible	bacteria	English	https://bacdive.dsmz.de
BacMap	interactive visual database containing hundreds of fully labeled, zoomable, and searchable maps of bacterial genomes.	genome bacteria		http://wishart.biology.ualberta.ca/BacMap/ http://bacmap.wishartlab.com/	free content
BacWGSTdb	free publicly accessible database developed for bacterial whole-genome sequence typing for epidemiological outbreak analysis	bacterial genome		http://bacdb.cn/BacWGSTdb
Bacterial Small Regulatory RNA Database	repository for published bacterial sRNA sequences with annotations and expression profiles	transfer RNA		http://kwanlab.bio.cuhk.edu.hk/BSRD	Open Database License
Bangladesh Fisheries Information Share Home	Academic publisher based in Bangladesh			http://www.bdfish.org/	Creative Commons Attribution-NonCommercial
Barcode of Life Data Systems	sequence database of DNA barcoding		English	https://boldsystems.org/ http://www.barcodinglife.org/
BarleyBase	online database for plant microarrays with integrated tools for data visualization and statistical analysis	plant		http://www.barleybase.org
Belgian Species List	taxonomy database			https://www.species.be	Creative Commons CC0 License
Bgee	gene expression database			https://www.bgee.org/	Creative Commons CC0 License
BiGG Models	Database of genome-scale metabolic networks.			http://bigg.ucsd.edu/
BindingDB	database for protein and small molecule interactions			http://bindingdb.org/	Creative Commons Attribution 3.0 United States
Bio2RDF	biological database			http://bio2rdf.org/
BioCarta	biological database with maps of signaling and metabolic pathways			http://cgap.nci.nih.gov/Pathways/BioCarta_Pathways
BioCyc database collection	collection of 7667 Pathway/Genome Databases (PGDBs)			http://biocyc.org/	free content
BioFuelDB	database of enzymes which have application in biofuel production.	enzyme biofuel		http://metagenomics.iiserb.ac.in/biofueldb/
BioGRID	biological database			http://www.thebiogrid.org
BioLib	online taxonomic encyclopedia		Czech English	https://www.biolib.cz https://www.biolib.cz/en/
BioModels Database	database of biological reactions			http://www.ebi.ac.uk/biomodels-main/ https://www.ebi.ac.uk/biomodels-main/	Creative Commons CC0 License
BioPlex
BioSample	database with descriptions of biological source materials used in experimental assays	biosample	English	https://www.ncbi.nlm.nih.gov/biosample
BioSamples	database that stores and supplies descriptions and metadata about biological samples used in research and development by academia and industry.			http://www.ebi.ac.uk/biosamples https://www.ebi.ac.uk/biosamples/	free content
BioTIME	database of time series related to biodiversity		English	http://biotime.st-andrews.ac.uk/publications.php
BioThesaurus	web-based system designed to map a comprehensive collection of protein and gene names to UniProtKB protein entries	thesaurus protein gene		https://proteininformationresource.org/iprolink/biothesaurus
BioWeb Ecuador | Amphibians of Ecuador	database that provides information amphibian species of Ecuador	Amphibia Ecuador evolution taxonomy conservation biology behavior	Spanish	https://bioweb.bio/faunaweb/amphibiaweb/	Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International
BioWeb Ecuador | Reptiles of Ecuador	database that provides information of reptiles species of Ecuador	Reptilia Ecuador evolution taxonomy conservation biology	Spanish	https://bioweb.bio/faunaweb/reptiliaweb/	Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International
Biodiversity Heritage Library	digital library, online database and large-scale digitization project for biodiversity literature	natural history		https://www.biodiversitylibrary.org/ https://about.biodiversitylibrary.org/about/bhl-consortium/
Biodiversity Information System for Europe	web-based platform providing information on biodiversity and conservation in Europe			https://biodiversity.europa.eu/
BiolFlor	The database BiolFlor contains almost 3660 species and more than 60 traits.			http://www.ufz.de/biolflor/index.jsp
Biological Magnetic Resonance Data Bank	repository for data from nuclear magnetic resonance spectroscopy on biomolecules	nuclear magnetic resonance biomolecule		http://www.bmrb.wisc.edu/
Biomedicina Slovenica	medical database			http://ricinus2.mf.uni-lj.si/BS/
Biometrics use by the South African government
Biomolecule stretching database	database of information at mechanical stretching of biomolecules	biomolecule		http://www.ifpan.edu.pl/BSDB
Bionumbers	free-access database of quantitative data in biology			https://bionumbers.hms.harvard.edu/
Biota	database that provides information of all the species of the Canary Islands	Amphibia Reptilia taxonomy	Spanish	https://www.biodiversidadcanarias.es/biota/
Biota Information System of New Mexico	online database with information on the legal status and biology of all vertebrate and many invertebrate species found in New Mexico	biota flora fauna	English	https://bison-m.org/
Biota of New Zealand	online database of the biota of New Zealand	biota flora fauna biota of New Zealand	English	https://biotanz.landcareresearch.co.nz/
Bioweb Ecuador	database of ecuadorian species			https://bioweb.bio/
BirdLife Australia	Australian ornithological conservation organization		English	http://www.birdlife.org.au/
BirdLife International	global partnership of conservation organizations that strives to conserve birds		English	https://www.birdlife.org/
Birds of India	Birds of India online database		English	http://www.birdsofindia.org/home
Birds of the World	website from the Cornell Lab of Ornithology		English	https://birdsoftheworld.org/bow/home
BitterDB	database of natural and synthetic bitter taste compounds and their related bitter taste receptors	bitterness		https://bitterdb.agri.huji.ac.il/dbbitter.php
BodyParts3D/Anatomography	generated by coordinated expression of the organism's own genes that guide its morphogenesis	disease		http://lifesciencedb.jp/bp3d/?lng=en
Bonn Convention	treaty		English French	https://www.cms.int/
Botanischer Informationsknoten Bayern
Bovine Metabolome Database				http://www.cowmetdb.ca/cgi-bin/browse.cgi
Bovine genome database	integrated database			http://bovinegenome.org
BridgeDb Webservices	REST-like identifier mapping webservices			http://bridgedb.org/
British Trust for Ornithology	British research organization		English	http://www.bto.org
Brix	database of protein fragments			http://brix.crg.es/
BuchneraBase	post-genomic database for Buchnera sp. APS	Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomics		https://www.buchnera.org/
BugGuide	database of insects and arthropods		English	https://bugguide.net
Butterflies and Moths of North America				http://www.butterfliesandmoths.org/
Butterflies and Moths of the World			English	http://www.nhm.ac.uk/our-science/data/butmoth/
Butterflies of India	Butterflies of India online database		English	http://www.ifoundbutterflies.org/home
C. V. Starr Virtual Herbarium	online database		English
CAMPSing	CAMPSign is a tool for identification of antimicrobial peptides belonging to one of the 45 major AMP families present in CAMPR3	disease		http://www.campsign.bicnirrh.res.in/
CAPS-DB	structural classification of helix-cappings (caps) from protein structures			http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home
CARTaGENE biobank				http://www.cartagene.qc.ca/
CATH	database of protein domains structures	protein structure		http://www.cathdb.info	Creative Commons Attribution 4.0 International
CATH-Gene3D	biological database, a member database of InterPro
CAZy	the Carbohydrate-Active enZYmes Database			http://www.cazy.org/
CC+	resource for understand sequence-to-structure relationships for coiled-coil folding and assembly	Coiled coil		http://coiledcoils.chm.bris.ac.uk/ccplus/search
CGView				http://wishart.biology.ualberta.ca/cgview/xml_overview.html
CIViC database	an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer			https://civic.genome.wustl.edu/#/home	Creative Commons CC0 License
CLIPZ
CMGS database (CMGSDB)	Computational models for gene silencing in C. elegans database	gene Caenorhabditis elegans		https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/
COMBINE	initiative to coordinate the development of the community standards and formats for computational models in systems biology			http://co.mbine.org/
CONABIO	government biodiversity commission in Mexico		Spanish	http://www.conabio.gob.mx/
COVID19db	platform to discover potential drugs and targets of COVID-19 at whole transcriptome scale	COVID-19		http://www.biomedical-web.com/covid19db/home
COXPRESdb	database provides co-regulated gene relationships to estimate gene functions	gene		https://coxpresdb.jp/
CPDB	resources for studying circular permutation and relationships among protein structures	cyclic permutation protein structure		http://10.life.nctu.edu.tw/cpdb
CSVS - The Collaborative Spanish Variability Server	a crowdsourcing initiative to provide information about the genomic variability of the Spanish population to the scientific/medical community	disease		http://csvs.babelomics.org/
CTCFBSDB: A database for CTCF binding sites and genome organization	The database is designed to facilitate the studies on insulators and their roles in demarcating functional genomic domains.	genome CTCF		https://insulatordb.uthsc.edu/
CaSNP				http://cistrome.dfci.harvard.edu/CaSNP/	proprietary license
California Invasive Plant Council				https://www.cal-ipc.org/
California Native Plant Society	organization		English	http://www.cnps.org
Cambridge Structural Database	repository for small molecule crystal structures	chemistry materials science crystallography		https://www.ccdc.cam.ac.uk/structures/	proprietary license
Cancer Biomarkers database	database of cancer biomarkers			https://www.cancergenomeinterpreter.org/biomarkers	Creative Commons CC0 License
Cancer Cell Metabolism Gene DB	database of cancer cell metabolism gene	cancer cell metabolism gene		https://bioinfo.uth.edu/ccmGDB/
CancerResource				http://data-analysis.charite.de/care/
Candida Genome Database	database for genomic sequence data and gene and protein information for Candida albicans and related species.	Candida genome		http://www.candidagenome.org/
Carbohydrate Structure Database	stores data on glycans and glycoconjugates of bacterial, archaean, plant and fungal origin	glycoconjugate glycan		http://csdb.glycoscience.ru/database
CaribHerp	database of all amphibian and reptile species of all Caribbean islands	Amphibia Reptilia Caribbean	English	http://www.caribherp.org/
Carotenoids Database	The Carotenoids Database currently provides information on 1204 natural carotenoids in 722 source organisms.Data on their structures and source organisms were obtained from the latest available original papers.	carotenoid β-carotene	English	http://carotenoiddb.jp/index.html
Carpe Database	A dynamic epilepsy genetics database sponsored by a National Science Foundation CAREER Award and the Department of Biological Sciences at The University of Alabama.	epilepsy disease		http://carpedb.ua.edu/
Catalogue of Life	online database of taxa		English	http://www.catalogueoflife.org/
Catalogue of Life China	online database of taxa in China		Chinese English	http://www.sp2000.org.cn/
Catalogue of Life in Taiwan	online database of taxa in Taiwan		Traditional Chinese English	https://taicol.tw	Creative Commons Attribution 4.0 International Creative Commons Attribution 2.5 Generic
Catalogue of the Lepidoptera of Belgium	Catalogue of the Lepidoptera of Belgium online database		English	https://projects.biodiversity.be/lepidoptera
Catfish genome database				http://catfishgenome.org/
CauloBrowser	online resource for searching genes of interest and downloading genome-wide of Caulobacter crescentus	Caulobacter crescentus		http://web.stanford.edu/group/golden_gate_clon/cgi-bin/index/index.py
CeCaFDB	Database of metabolic fluxes			http://www.cecafdb.org/	proprietary license
CeNDR	provides sequence data and genome mapping, also accepts, organizes and distributes wild strains to research groups	Caenorhabditis elegans		https://www.elegansvariation.org
Celebrate Hummingbirds
Cell Centred Database (CCDB)	web accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging	cell microscopy	English
CellMarker	biological database	cluster of differentiation		http://bio-bigdata.hrbmu.edu.cn/CellMarker/index.jsp
Cellosaurus	on-line knowledge resource on cell lines	cell line cell biology biotechnology	English	https://www.cellosaurus.org/	Creative Commons Attribution 4.0 International
Center for Biological Diversity	non-profit organization in the USA		English	http://biologicaldiversity.org/
Central African Plants	digitalization of reference collections of plant material from Central Africa (DR Congo, Rwanda and Burundi)	flora plant Rubiaceae Balsaminaceae Orchidaceae	English	http://db.plantentuinmeise.be/RESEARCH/DATABASES/FOCA/index.php?la=en http://projects.biodiversity.be/brcap/
Central diabetes register of the GDR
Cervical cancer gene database				http://crdd.osdd.net/raghava/ccdb/
ChEBI	database and ontology of molecular entities focused on small chemical compounds	Nelumbo nucifera house mouse dehydroascorbic acid geranylacetone		http://www.ebi.ac.uk/chebi	Creative Commons Attribution 3.0 Unported
ChEMBL	chemical database of bioactive molecules with drug-like properties			https://www.ebi.ac.uk/chembl/ http://www.ebi.ac.uk/chembl	Creative Commons Attribution-ShareAlike 3.0 Unported
ChIPBase	is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data.	ChIP-sequencing transcription factor gene		https://rna.sysu.edu.cn/chipbase/
ChannelsDB	The database contains information about channel positions, geometry and physicochemical properties	physicochemical process		https://channelsdb.ncbr.muni.cz/
ChemDB	public database of small molecules available over the web	small molecule		http://cdb.ics.uci.edu
ChemProt				http://potentia.cbs.dtu.dk/ChemProt/	proprietary license
ChemSpider	database of chemicals owned by the Royal Society of Chemistry; see P661	chemistry		https://www.chemspider.com/	proprietary license
Chemical Effects in Biological Systems (CEBS)	houses data from the National Toxicology Program research and testing program	toxicology	English	https://cebs.niehs.nih.gov/cebs		comma-separated values
ChiTaRS	database with chimeric RNAs of two or more different genes			https://chitars.bioinfo.cnio.es/
ChimerDB				http://genome.ewha.ac.kr/ChimerDB/
China Animal Scientific Database	scientific database	animal		http://www.zoology.csdb.cn/
China National GeneBank	National-level gene storage biobank and data repository			https://www.cngb.org/
ChlamDB	comparative genomics database containing the entire Chlamydiae phylum as well as their closest relatives belonging to the Planctomycetes-Verrucomicrobiae-Chlamydiae (PVC) superphylum	genomics Chlamydiae Planctomycetes Verrucomicrobiae		https://chlamdb.ch
ChromDB- The Chromatin Database	Chromatin-associated proteins in a broad range of organisms			http://www.chromdb.org/
Cicadas of India	Cicadas of India online database		English	http://www.indiancicadas.org/
Ciliate MDS/IES database
Ciona intestinalis protein database
CirGRDB	A database for the genome-wide deciphering circadian genes and their regulators			http://cirgrdb.biols.ac.cn/
CircaDB	database of circadian expression profiles	gene		http://circadb.hogeneschlab.org/
CistromeDB	web resource of human and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin profiling assays	Cistrome		http://cistrome.org/db
ClinVar	database on the relationships between human variations and phenotypes			http://www.ncbi.nlm.nih.gov/clinvar/
ClinWiki	clinical trials database	clinical trial		https://www.clinwiki.org/	MIT License
CoV3D	resource for structures of coronavirus proteins and their recognition by antibodies and other molecules	COVID-19		https://cov3d.ibbr.umd.edu/
Cockroach Species File				https://cockroach.speciesfile.org/
Coleorrhyncha Species File	online biological database			http://coleorrhyncha.speciesfile.org/HomePage/Coleorrhyncha/HomePage.aspx
Colibri	provides a complete dataset of DNA and protein sequences derived from the strain E. coli K-12	Escherichia coli		http://genolist.pasteur.fr/Colibri
Colil				https://colil.dbcls.jp/
CollecTF	Database of transcription factor binding sites	transcription factor		http://collectf.org/browse/home/
Colocalization Benchmark Source				http://www.colocalization-benchmark.com/	Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
Color Data	Color Data is the largest public database of its kind, containing aggregated genetic and phenotypic information from 54,000 individuals who took a Color test.	color human genetics phenotype Herencia breast cancer cardiovascular disease allele	English	https://data.color.com/
Color Genes-International Federation of Pigment Cell Societies	The alliancegenome.org links for each gene provide a detailed table describing the criteria used to determine orthologs across species.	gene pigment true rats Human disease genes Zebrafish pigmentation mutations and the processes of neural crest development.	English	https://www.ifpcs.org/colorgenes/
Community Assessment of Community Annotation with Ontologies	project to do large-scale manual community annotation of gene function using the Gene Ontology as a multi-institution student competition			http://gowiki.tamu.edu/wiki/index.php/Category:CACAO https://gowiki.tamu.edu/wiki/index.php/Category:CACAO
Comparative Toxicogenomics Database	online research tool describing chemical-gene-disease interactions	toxicogenomics	English	http://ctdbase.org/	proprietary license
Compendium of protein lysine acetylation				http://cpla.biocuckoo.org/
Competing endogenous RNA (ceRNA) databases and resources
Complex Portal	biological database	protein-containing complex	English	https://www.ebi.ac.uk/complexportal/home
ConSurf-DB	server for the identification of functional regions and conserved in proteins	protein		https://consurfdb.tau.ac.il
Conformational Angles DataBase	provides data on conformation angles of protein structures availables in the Protein Data Bank	protein structure		http://cluster.physics.iisc.ernet.in/cadb/input.html
Conformational dynamics data bank	database of protein conformations
ConoServer-database for conopeptides	Sequence and structures of peptides expressed by marine cone snail			http://www.conoserver.org/
Consensus CDS Project	provides a dataset of protein-coding regions identically on the human and mouse reference genome assembly	consensus sequence		https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi
ConsensusPathDB	Database integrates interaction networks in Homo sapiens including binary and complex protein-protein, genetic, metabolic, signaling, gene regulatory and drug-target interactions, as well as biochemical pathways.	human protein		http://consensuspathdb.org
Conserved Domain Database				https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
Coreoidea Species File				http://coreoidea.speciesfile.org/HomePage/Coreoidea/HomePage.aspx
Critical Assessment of Protein Function Annotation	GO annotation database			http://biofunctionprediction.org/cafa/
CryptoDB	provides genome data of Cryptosporidium in a single user-friendly database	Cryptosporidium		https://cryptodb.org/cryptodb/app
Crystallography Open Database	open-access collection of crystal structures of organic, inorganic, metal-organic compounds and minerals	chemistry Crystal Structures		https://www.crystallography.net/cod	Creative Commons CC0 License
CyMoBase	CyMoBase is an online database for manually annotated protein sequences of cytoskeletal and motor proteins and associated information			https://www.cymobase.org/cymobase
Cyanolyase	Sequences and motifs of the phycobilin lyase protein family			http://cyanolyase.genouest.org/
Cybase The database of cyclic proteins	CyBase is a curated database and information source for backbone-cyclised proteins. The database incorporates naturally occurring cyclic proteins as well as synthetic derivatives, grafted analogues and acyclic permutants.			http://www.cybase.org.au/
CyberCell				http://ccdb.wishartlab.com/CCDB/
DASHR	provides the most comprehensive information of human small non-coding RNA (sncRNA) genes	non-coding RNA		https://dashr1.lisanwanglab.org/smdb.php
DAnCER	database for chromatin modifications and their relation to human disease			http://wodaklab.org/dancer/	proprietary license
DB-ALM				https://ecvam-dbalm.jrc.ec.europa.eu/
DBASS3/5
DBETH	database of sequences, structures, interaction networks and analytical results for 229 exotoxins, from 26 different human pathogenic bacterial genus	exotoxin human		http://www.hpppi.iicb.res.in/btox/
DBTGR	provides information on tunicate gene regulation such as the location of expression, or the identified regulatory elements present in promoter sequences	regulation of gene expression		https://dbtgr.hgc.jp
DBTSS	DataBase of transcriptional start sites	RNA		https://dbtss.hgc.jp/	proprietary license
DDInter	database			http://ddinter.scbdd.com	Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
DEG database	provides find links to the diverse data types of complete and in-progress of sequencing, assembly, annotation, and mapping projects for cellular organisms	essential gene		http://origin.tubic.org/deg/public/index.php
DEPOD	DEPOD - the human DEPhOsphorylation Database (version 1.1) is a manually curated database collecting human active and inactive phosphatases, their experimentally verified protein and non-protein substrates			http://locate.imb.uq.edu.au/
DG-CST (Disease Gene Conserved Sequence Tags Database)	a collection of conserved sequence elements, identified by a systematic genomic sequence comparison between a set of human genes involved in the pathogenesis of genetic disorders and their murine counterparts	gene disease		http://dgcst.ceinge.unina.it/
DIANA-LncBase	repository with experimentally supported miRNA targets on non-coding transcripts	microRNA		https://diana.e-ce.uth.gr/lncbasev3
DIDA: A curated and annotated digenic diseases database	a novel database that provides for the first time detailed information on genes and associated genetic variants involved in digenic diseases, the simplest form of oligogenic inheritance	gene disease		http://dida.ibsquare.be/about/
DIMA				http://webclu.bio.wzw.tum.de/dima
DNA Data Bank of Japan	DNA sequence database			http://www.ddbj.nig.ac.jp/	Creative Commons Attribution 2.1 Japan
DNAtraffic	biological database			http://dnatraffic.ibb.waw.pl/
DOMMINO	database of macromolecular interactions	macromolecule		http://korkinlab.org/dommino
DPVweb	database for virologists	plant virus		http://www.dpvweb.net
DSDBASE	database on disulphide bonds in proteins	disulfide bond		http://caps.ncbs.res.in/dsdbase/dsdbase.html
DSMM	source of information about movies showing biomolecular motions that have been generated by computer simulation	biomolecule molecular dynamics simulation		https://projects.h-its.org/dbase/dsmm
DatabasE of StruCtuRe and functIon residue-Based prEdictions of PROTeins (DescribePROT)	13 putative structural and functional properties at the amino acid level complete proteomes of popular/model organisms.			http://biomine.cs.vcu.edu/servers/DESCRIBEPROT/main.php
Database for bacterial group II introns	catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank	Group II intron bacterial DNA		http://fp.ucalgary.ca/group2introns
Database of Genomic Variants	The objective of the Database of Genomic Variants is to provide a comprehensive summary of structural variation in the human genome.	disease		http://dgv.tcag.ca/dgv/app/home
Database of Interacting Protein Structures (DIPS)	a comprehensive dataset of protein complexes mined from the PDB			https://www.atom3d.ai/pip.html	Creative Commons Attribution 4.0 International
Database of Interacting Proteins	Database of Interacting Proteins			http://dip.doe-mbi.ucla.edu/dip/Main.cgi	Creative Commons Attribution-NoDerivs 3.0 Unported
Database of Invasive Island Species Eradications	biological database			http://diise.islandconservation.org/
Database of Vascular Plants of Canada	community contributed taxonomic checklist of all vascular plants of Canada, Saint Pierre and Miquelon, and Greenland		French English Latin	http://data.canadensys.net/vascan/search
DbDNV
Decoys-R-Us	database on conformations of protein sequences generated by computer	protein structure		http://compbio.buffalo.edu/dd
Defensins Knowledgebase	The defensins knowledgebase is a manually curated database and information source devoted to the defensin family of antimicrobial peptides.			http://defensins.bii.a-star.edu.sg/
Department of Defense Serum Repository	American medical research facility
Dermaptera Species File	online biological database	earwigs		https://dermaptera.speciesfile.org/
Developmental FunctionaL Annotation at Tufts	an interdisciplinary team dedicated to annotating gene function related to human fetal development			http://bcb.cs.tufts.edu/dflat/
DiProDB	The dinucleotide property database is designed to collect and analyse thermodynamic, structural and other dinucleotide properties			http://diprodb.fli-leibniz.de/	proprietary license
Diatom EST DB	database of expressed sequence tag (EST) from P. tricornutum for digital gene expression studies	Diatomeas Phaeodactylum tricornutum eukaryote microorganism expressed sequence tag		https://www.diatomics.biologie.ens.fr/EST/
Digital Ageing Atlas	The Digital Ageing Atlas (DAA) is a portal of age-related changes covering different biological levels.	human ageing disease		https://ageing-map.org/
Digital Atlas of the Virginia Flora	website	flora wild plant Tracheophyta plant	English	https://vaplantatlas.org/index.php
Digital Development Database	developmental phenomics, cell-specific gene functions and cell differentiation in C. elegans	cell differentiation phenotype Caenorhabditis elegans		http://digital-development.org
DisGeNET	DisGeNET is a knowledge platform that contains one of the largest available collections of genes and variants involved in human diseases.	gene disease		http://www.disgenet.org/	Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
DisProt	Database of intrinsically disordered proteins (IDPs)	protein intrinsically unstructured proteins		http://www.disprot.org/ https://disprot.org/	Creative Commons Attribution 4.0 International
Disease Ontology	formal ontology of human disease	disease	English	https://disease-ontology.org/	Creative Commons CC0 License
Diseases Database	UK-based medical information database		English	http://www.diseasesdatabase.com/
Diseases and Traits in LD	The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) results by making it easy to query and visualize disease-associated SNPs and genes in their chromosomal context.	disease		http://distild.jensenlab.org/about.html
DoBISCUIT	Database Of BIoSynthesis clusters CUrated and InTegrated			http://immunet.cn/mimodb
DoGSD	integrated resource for domestic dog (Canis lupus familiaris) and wild canids which focuses in genome data	genome dog Canidae		https://ngdc.cncb.ac.cn/idog
DockCoV2	drugs database for COVID-19	COVID-19 drug		https://covirus.cc/drugs/
Domine Database	database of protein domain interactions			http://domine.utdallas.edu	proprietary license
Données d'observations pour la reconnaissance et l'identification de la faune et de la flore subaquatiques	Observation data for the recognition and identification of underwater fauna and flora	marine biology	French	http://doris.ffessm.fr/accueil.asp
Dragon Database for Methylated Genes and Diseases	Dragon Database for Methylated Genes and Diseases (DDMGD) can provide associations between methylated genes and diseases.	gene disease		https://www.cbrc.kaust.edu.sa/ddmgd/
DroSpeGe	view of Drosophila and other species genome data with genome maps and BLAST sequence search	Drosophila Genomes		http://insects.eugenes.org/DroSpeGe
Drosophila polymorphism database	collection of polymorphic sequences in the Drosophila genus	polymorphism Drosophila		http://dpdb.uab.es/dpdb
Drug repurposing for covid-19	drugs database from text mining, machine learning, manual curation to collect the latest data on both drugs and drug targets used for COVID-19	COVID-19		http://covid19.md.biu.ac.il/
DrugBank	bioinformatics and cheminformatics database from the University of Alberta			https://www.drugbank.com/	all rights reserved
Dutch Caribbean Species Register	online database of species in the Dutch Caribbean			https://www.dutchcaribbeanspecies.org/
D²P²	community resource for pre-computed disordered protein predictions	protein		https://d2p2.pro
E. Coli Metabolome Database	online database of small molecule metabolites found in or produced by E. coli			http://ecmdb.ca/
ECOD	database of classification of protein domains according to their evolutionary relationships	protein domain		http://prodata.swmed.edu/ecod
ECRbase	database of Evolutionary Conserved Regions (ECRs), Promoters,and Transcription Factor Binding Sites in Vertebrate Genomescreated using ECR Browser alignments			https://ecrbase.dcode.org/
ECgene	database of genomic annotations			http://genome.ewha.ac.kr/ECgene/	proprietary license
EDAS	spliced human gene database
EDRN	cancer biomarker discovery project			http://edrn.nci.nih.gov/	proprietary license
EK3D	provides information about the sugar composition, epimeric and enantiomeric forms and linkages between the sugar monomers	Escherichia coli		https://www.iith.ac.in/EK3D
EMAGE				https://www.emouseatlas.org/emage/home.php
EMDataBank	global resource for three-dimensional electron microscopy structure data archiving and retrieval	electron microscopy		http://www.emdataresource.org
ENZYME	database of biological enzymes	nomenclature classification scheme		http://www.enzyme.expasy.org/
EPD Eukaryotic Promoter Database	database			http://epd.vital-it.ch/
EPPO Global Database				https://gd.eppo.int/search
EROP-Moscow	Natural oligopeptides may regulate nearly all vital processes. To date, the chemical structures of nearly 6000 oligopeptides have been identified from more than 1000 organisms representing all the biological kingdoms7			http://erop.inbi.ras.ru/
EU Soil Observatory	research facility in soil science
EURING Data Bank	database about animal ringing
EVEREST - EVolutionary Ensembles of REcurrent SegmenTs	EVEREST is an automatic computational process identifying protein domainsand classifying them into families. The EVEREST database contains 20,029families, each defined by one or more HMMER HMM			http://www.everest.cs.huji.ac.il/
Early Life Exposures in Mexico to ENvironmental Toxicants (ELEMENT)	research project	early childhood development Mexico City pollution contamination		https://sph.umich.edu/cehc/element/index.html
Echinobase	genomic information on echinoderms, sequence and annotation data for species from all of the eleutherozoan echinoderms (sea urchins, sea stars, brittle stars and sea cucumbers).	Echinodermata genomics		http://legacy.echinobase.org/Echinobase/
Echinoid Directory				http://www.nhm.ac.uk/our-science/data/echinoid-directory/index.html
Ecocrop	database of plants used as agricultural crops, including their ideal growing conditions		English	http://ecocrop.fao.org/ecocrop/srv/en/home
EcoliWiki	facilitates sharing of biological knowledge about E. coli as a model organism	Escherichia coli		http://ecoliwiki.net
EffectiveDB	provides tools for browsing and retrieving comprehensive precalculated bacterial genomes and predicted bacterial secreted proteins	bacterial genome protein		https://www.effectors.org
Electron Microscopy Data Bank	Database			https://www.ebi.ac.uk/emdb/ https://www.ebi.ac.uk/pdbe/emdb/
Embioptera Species File Online	online biological database			https://embioptera.speciesfile.org/
Encyclopedia of DNA Elements at UCSC	list of functional elements in the human genome			http://genome.ucsc.edu/ENCODE/	proprietary license
Encyclopedia of Life	collaborative project intended to create an encyclopedia documenting all living species known to science		English	https://eol.org
Endemia.nc	website on the fauna and flora of New Caledonia	fauna flora animal plant biota	French	https://endemia.nc/
Ensembl COVID-19 resource		COVID-19 SARS-CoV-2		https://covid-19.ensembl.org/index.html
Ensembl Genomes	scientific project			http://ensemblgenomes.org/ http://www.ensemblgenomes.org/	free content
Ensembl Plants	Ensembl database for accessing genome-scale data from plants.			http://plants.ensembl.org/
Ensembl genome database project	gene sequence database			http://www.ensembl.org/
Entrez	cross-database search engine, or web portal		English	http://www.ncbi.nlm.nih.gov/gquery/
Environmental Conservation Online System				https://ecos.fws.gov/ecp/
Epistemonikos	medical database of systematic reviews	systematic review		https://www.epistemonikos.org/
Esc (Immune escape variants in SARS-CoV-2)	comprehensive and manually curated compendium of genetic variants in SARS-CoV-2 associated with immune escape	COVID-19		https://clingen.igib.res.in/esc/
Essential genes in E. coli	provides links to data and shows a short list of essential genes in E. coli	essential gene Escherichia coli		https://www.genome.wisc.edu/resources/essential.htm
Ethanol-Related Gene Resource	The aim of the Ethanol-Related Gene Resource (ERGR) database is to provide a comprehensive and useful gene resource to the Ethanol/Alcohol research community	genetics disease		https://bioinfo.uth.edu/ERGR//
Eukaryotic Linear Motif Resource	computational biology resource of annotation and detection of eukaryotic linear motifs			http://elm.eu.org
Euro+Med PlantBase	botanical online database	botany		https://europlusmed.org/
Eurocarbdb
Europe PubMed Central	database of biomedical move		English	http://europepmc.org/
European Genome-Phenome Archive	Online archive of genetic and phenotypic human data			https://ega-archive.org/
European Nature Information System			English	https://eunis.eea.europa.eu/
European Nucleotide Archive	Online database from the EBI on Nucleotides			http://www.ebi.ac.uk/ena http://wwwdev.ebi.ac.uk/ena	proprietary license
European Pollen Database	biological database	pollen		http://europeanpollendatabase.net/
ExPASy	Expert Protein-Analysis System			https://www.expasy.org
ExoCarta
Exome Aggregation Consortium Database (gnomAD)	a coalition of investigators seeking to aggregate and harmonize exome and genome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community	gene disease genome human		https://gnomad.broadinstitute.org/
ExplorEnz	database containing the list of enzyme nomenclature and classification approved by the International Union of Biochemistry (IUBMB).	enzyme		https://www.enzyme-database.org/
Expression Atlas	Gene expression database			http://www.ebi.ac.uk/gxa	Creative Commons Attribution 4.0 International
EzTaxon Database
FANTOM	international research consortium
FARME	Functional antibiotic resistance metagenomic element database	antibiotic DNA protein		http://staff.washington.edu/jwallace/farme/index.html
FDA Adverse Event Reporting System	US FDA supporting computerized database
FEIS	Fire Effects Information System online database			https://www.feis-crs.org/feis/
FINDbase	online database of frequencies of clinically relevant genomic variants	disease		https://findbase.org/
FNAEG	Automated National File of Genetic Prints			https://www.cnil.fr/fr/fnaeg-fichier-national-des-empreintes-genetiques	proprietary license
FREP	biological database
Families of structurally similar proteins
Fauna Sinica	Monograph series describing animals in China	fauna of China wildlife of China zoogeography	Chinese
Featherbase	database about feathers			https://www.featherbase.info/
Felleskatalogen				https://www.felleskatalogen.no
FireDB	structures in the Protein Data Bank(PDB) database, contain annotations of residues participating in a functional site	protein		https://firedb.bioinfo.cnio.es/	Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International
Flora and Fungi of Brazil	online database of Brazilian flora and fungi	flora fungus	English Brazilian Portuguese Spanish	https://reflora.jbrj.gov.br/reflora/listaBrasil/ConsultaPublicaUC/ConsultaPublicaUC.do#CondicaoTaxonCP
Flora of Australia	multivolume ongoing work about the flora of Australia		English
Flora of China	English-language multi-volume book and online database		English	http://www.efloras.org/flora_page.aspx?flora_id=2 http://www.iplant.cn/foc/
Flora of North America	book, website, database		English	http://floranorthamerica.org/
Flora of Pan-Himalayas	flora	plant	English	http://www.flph.org/
Flora of Wisconsin	Flora of Wisconsin online database		English	http://wisflora.herbarium.wisc.edu/index.php
Flora of the Southeastern United States	website	flora wild plant plant	English	https://fsus.ncbg.unc.edu/main.php?pg=index.php
FloraCatalana			Catalan	http://www.floracatalana.net
FloraWeb				http://www.floraweb.de
Florida Shorebird Database				https://public.myfwc.com/crossdoi/shorebirds/index.aspx
FlyATlas 2	successor and complement to the FlyAtlas with RNA-Seq, miRNA-Seq and sex-specific data	Drosophila gene expression		http://www.flyatlas2.org
FlyAtlas	Drosophila gene expression atlas	Drosophila melanogaster gene expression		http://flyatlas.org/atlas.cgi
FlyBase	Database of Drosophila Genes & Genomes	nucleotide eukaryote genome	English	https://flybase.org/	proprietary license
FlyFactorSurvey	The FlyFactorSurvey database summarizes a project using the bacterial one-hybrid method to systematically describe the binding site preferences of transcription factors in Drosophila melanogaster	Drosophila melanogaster Bacterial one-hybrid system		https://mccb.umassmed.edu/ffs/
FlyMine	integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans	Drosophila Anopheles Caenorhabditis elegans		https://www.flymine.org/flymine
FlyTF: Drosophila transcription factor database	Drosophila transcription factor database	Drosophila transcription factor		https://www.flytf.org/
Foodb		chemical substance		http://foodb.ca/	proprietary license
Fossilworks	online resource for fossil animals, plants, and microorganisms		English	http://www.fossilworks.org
Fulgoromorpha Lists On the Web	online taxonomy database dedicated to planthoppers			https://flow.hemiptera-databases.org/flow/
Full-parasites				https://fullmal.hgc.jp/
FunCat	hierarchically structured, organism-independent, flexible and scalable controlled classification system enabling the functional description of proteins from any organism			http://mips.helmholtz-muenchen.de/funcatDB/	proprietary license
FunCoup	database for genome-wide functional association networks	genome		https://funcoup5.scilifelab.se/search/
FunSimMat	provides searching functional similarity values for proteins and protein families and ranking disease candidate proteins	protein		https://funsimmat.bioinf.mpi-inf.mpg.de
Functional element SNPs database
FungiDB	functional genomic resource for pan-fungal genomes that was developed in partnership with the Eukaryotic Pathogen Bioinformatic resource center	fungal genome Oomycetes		https://fungidb.org/fungidb/app
Fusarium graminearum genome database	provides information of the Fusarium graminearum genome	Fusarium graminearum		http://mips.gsf.de/genre/proj/fusarium
G protein-coupled receptors database
GBshape: a genome browser database for DNA shape annotations	The database currently contains annotations for minor groove width (MGW), propeller twist (ProT), Roll, helix twist (HelT), and hydroxyl radical cleavage (ORChID2) for 94 organisms.	DNA gene genome		http://rohsdb.cmb.usc.edu/GBshape/
GDB Human Genome Database	community curated collection of human genomic data			http://www.gdb.org/
GEN2PHEN				http://www.gen2phen.org/	proprietary license
GENCODE				https://www.gencodegenes.org/	proprietary license
GISAID	virus genome database			https://gisaid.org/ https://platform.gisaid.org
GISSD	is a specialized and comprehensive database for group I introns, focusing on integrating useful group I intron information from all available databases	Group I catalytic intron		http://www.rna.whu.edu.cn/gissd/
GO Central	Manual annotation from PAINT curators into the UniProt Protein2GO curation tool			http://www.geneontology.org/GO.refgenome.shtml
GOA	provides high-quality gene ontology annotations to proteins in the UniProtKB	Gene Ontology		https://www.ebi.ac.uk/GOA
GONIAT	Paleozoic ammonoid online database system		English	http://www.goniat.org/
GONUTS	community-based browser that allows users to share and edit notes on the use of each term in Gene Ontology, and to contribute annotations for specific genes	Gene Ontology		https://gowiki.tamu.edu
GPCRdb	G protein-coupled receptors are the most abundant mediators of both human signalling processes and therapeutic effects.			https://gpcrdb.org/
GRSDB	provides information on composition and distribution of putative Quadruplex forming 'G'-Rich Sequences (QGRS)	G-quadruplex		https://bioinformatics.ramapo.edu/GRSDB2
GTOP	protein data analysis database identified in genome projects	protein		http://spock.genes.nig.ac.jp/~genome
GTRD	gene transcription regulation database	gene		http://gtrd.biouml.org/#!
GWASdb	online bioinformatics database			http://jjwanglab.org/gwasdb
GabiPD: the GABI primary database	plant integrative ‘omics‘ database	plant genome		http://www.gabipd.org/
GadFly	genome annotation database of Drosophila	genome Drosophila		https://www.fruitfly.org/
Gallformers	the place to ID and learn about galls on plants in the US and Canada	gall former	English	https://gallformers.org
Gemina data model	describes the structure of a Genima epidemiological outbreak database				Creative Commons CC0 License
GenColors	web-based software/database system for determination of prokaryotic genomes with emphasis on genome comparison	genome prokaryotes		http://gencolors.leibniz-fli.de
Gene Expression Omnibus	gene expression data repository	biology medicine		https://www.ncbi.nlm.nih.gov/geo/
Gene Ontology	source of information on the functions of genes for computational analysis in studies of molecular biology and genetics experimentsbase	gene		http://www.geneontology.org
Gene Wiki	wiki-based collection of information related to human genes	human genome
GeneCards	human gene database maintained by the Weizmann Institute of Science	gene		http://www.genecards.org/
GeneDB	database of genome, housing sequence and annotation from a diverse range of organisms.	genome prokaryotes fungus	English	http://www.genedb.org/
GeneReviews	online database containing standardized peer-reviewed articles that describe specific heritable diseases			http://www.ncbi.nlm.nih.gov/sites/GeneTests/review
Generation Scotland
Genes to Cognition	Is a neuroscience research programme with the dual aim of discovering fundamental biological principles and important insights into brain disease.	gene disease		https://genes2cognition.org/
Genetic codes	biological database hosted by NCBI	genetics		http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
Genetics Home Reference	the National Library of Medicine's web site for consumer information about genetic conditions and the genes responsible for those conditions	DNA genome gene rare disease genetic disease	English	https://ghr.nlm.nih.gov
Genetics Home Reference	The Genetics Home Reference is designed for patients and others to learn about specific genetic conditions and the genes that cause them.	gene disease		https://medlineplus.gov/genetics/
GenoList	integrated environment for exploration of microbial genomes and tools for genome analysis and synteny visualization	microbial genome synteny		http://genolist.pasteur.fr
Genome Project Database	provides find links to the diverse data types of complete and in-progress of sequencing, assembly, annotation, and mapping projects for cellular organisms	Genome project		https://www.ncbi.nlm.nih.gov/bioproject
Genome3D	collaborative resource that provides predicted domain annotations and structural models for key sequences	protein structure		http://www.genome3d.eu
GenomeCRISPR	provides several data mining options and tools of CRISPR/Cas9 experiments allowing users to easily investigate and compare the results	CRISPR-Cas method		http://genomecrispr.dkfz.de
GenomeRNAi	database containing phenotypes from RNA interference (RNAi) screens in Drosophila and Homo sapiens	RNA		http://www.genomernai.org/
Genomes OnLine Database	resource for comprehensive access to information regarding genome and metagenome sequencing projects	metagenome genome		https://gold.jgi.doe.gov
Genomics England PanelApp	A curated database of gene-disease panels			https://panelapp.genomicsengland.co.uk/
Genomicus	genome browser that enables navigate in genomes of four different phyla and several dimensions: linearly, transversely and chronologically	genome		http://genomicus.biologie.ens.fr/genomicus
Genotypes and Phenotypes (dbGaP)	eveloped to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in Humans	disease		https://www.ncbi.nlm.nih.gov/gap/
Gephebase	database of genotype-phenotype relationships	gene eukaryote genotype phenotype		https://www.gephebase.org/
GigaDB	serves as a repository to host data and tools associated with datasets of scientific articles	data set		http://gigadb.org	Creative Commons CC0 License
Global Biodiversity Information Facility	aggregator of scientific data on biodiversity; data portal	biology biodiversity informatics	multiple languages	https://www.gbif.org
Global Compositae Database		Asteraceae	English	https://www.compositae.org/gcd/index.php
Global Ingredient Archival System	NCATS: Global Ingredient Archival System (GINAS)			https://tripod.nih.gov/ginas/ https://tripod.nih.gov/ginas/app/substances
Global Invasive Species Database	database developed by the IUCN listing information about taxon which are deemed invasive in various countries and regions of the world	invasive species	English	http://www.iucngisd.org/gisd/
Global Naturalized Alien Flora	biological database			https://glonaf.org/
GlyConnect	A platform combining sources of information to help understand the molecular actors of glycosylation	biology glycosylation		https://glyconnect.expasy.org/	Creative Commons Attribution 4.0 International
GlyGen	biological database about glycans and glycoproteins			https://glygen.org	Creative Commons Attribution 4.0 International
GlyTouCan	international Glycan Structure Repository	glycan		https://glytoucan.org
Glycan	collection of experimentally determined glycan structures	glycan		https://www.genome.jp/kegg/glycan
Glycan Fragment DB	database of glycan 3D structures	glycan		http://www.glycanstructure.org/fragment-db
GlycoMapsDB	database system for the management and archived of conformational maps and profiles	carbohydrate glycan		http://www.glycosciences.de/modeling/glycomapsdb/
GlycomeDB	integrates the structural and taxonomic data of all major public carbohydrate databases	glycan glycome		http://www.glycome-db.org	proprietary license
Glycosciences.DB	database of the Glycosciences.de portal that collects various kinds of data on glycan structures	glycan		http://www.glycosciences.de/database/
Glycosciences.de	web portal that provides databases and tools to support glycobiology and glycomics research.	glycobiology glycomics		http://www.glycosciences.de
Golm Metabolome Database				http://gmd.mpimp-golm.mpg.de/	proprietary license
Gramene	biological database			http://www.gramene.org/
GrassBase	database of grasses	Poaceae		https://www.kew.org/data/grasses-db.html
Great Places				https://www.calflora.org/entry/gphome.html
Great Plains Regional Herbarium Network	information portal of the Consortium of Northern Great Plains Herbaria	herbarium herbarium specimen botanical specimen	English	https://ngpherbaria.org/portal/
GreeNC	Wiki-database of plant lncRNAs	long non-coding RNA		http://greenc.sciencedesigners.com/wiki/Main_Page
GreenCircRNA	A Wiki-database of plant CircRNAs			http://greencirc.cn/
Greengenes	database that providing chimera screening, standard alignment, and taxonomic classification using published taxonomies	taxonomy ribosomal RNA		https://greengenes.lbl.gov/Download
Greglist	Database listing potential G-quadruplex regulated genes	gene		http://tubic.org/greglist/
Groupe de travail Invasions biologiques en milieux aquatiques			French	http://www.gt-ibma.eu
Grylloblattodea Species File	online biological database			https://grylloblattodea.speciesfile.org/
GtRNAdb	database contains tRNA gene predictions made by tRNAscan-SE on complete or nearly complete genomes	transfer RNA gene genome		http://gtrnadb.ucsc.edu/
Guide to North American Birds			English	http://www.audubon.org/bird-guide
H-Invitational	Comprehensive annotation resource for human genes and transcripts			http://www.h-invitational.jp/
HAMAP	system for the classification and annotation of protein sequences and associated annotation rules	proteome protein		https://hamap.expasy.org
HBVdb	web interface that allows queries and specialized analysis tools to investigate the genetic variability of the virus and the viral resistance to treatment	Hepatitis B virus		https://hbvdb.lyon.inserm.fr/HBVdb/
HEG-DB	database of prediction of genes of high expression in prokaryotic complete genomes under strong translational selection	overexpression genome		http://genomes.urv.cat/HEG-DB
HEXEvent - a database of Human EXon splicing Events	is a free database that provides a list of human internal exons and reports all their known splice events	exon human gene		http://hertellab.mmg.uci.edu/cgi-bin/HEXEvent/HEXEventWEB.cgi
HFV/ Ebola database	database to contain Ebola-associated genetic and immunological data, including the search interface, genome browser, curated nucleotide and protein sequence alignments	Ebola hemorrhagic fever genetics immunology nucleotide Genome browser		https://hfv.lanl.gov/content/index
HGTree	provides genome-wide horizontal gene transfer information for completely sequenced prokaryotic genomes	horizontal gene transfer		http://hgtree.snu.ac.kr
HIV Drug Resistance Database	Database at Stanford University that tracks 93 common mutations of HIV			https://hivdb.stanford.edu/
HIV-1 Human Interaction Database	Human Interaction Database	HIV		https://www.ncbi.nlm.nih.gov/genome/viruses/retroviruses/hiv-1/interactions/
HIV-1 resistance mutation database	database of mutations in HIV genes that confer resistance to anti-HIV drugs.	HIV medication		https://www.hiv.lanl.gov/content/sequence/RESDB/
HIstome				http://www.iiserpune.ac.in/~coee/histome/
HOMSTRAD	curated database of structure-based alignments for homologous protein families	protein family		https://mizuguchilab.org/homstrad
HRaP - Database of occurrence of HomoRepeats and Patterns in proteomes	With active studying of disordered regions and their function we focus our attention on manifold long repeats of one amino acid (homorepeats)			http://bioinfo.protres.ru/hrap/
HTPSELEX database	database contains sets of invitro selected transcription factor binding site sequences obtained with SELEX and high-throughput SELEX method	transcription factor		https://ccg.epfl.ch//htpselex/
Handbook of the Birds of the World	multi-volume series covering all bird species	ornithology	English	https://www.lynxeds.com/product-category/by-categories/encyclopedias/hbw/
HaploReg	tool for exploring annotations of the noncoding genome at variants on haplotype blocks	disease gene		https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php
HbVar	database related to human hemoglobin variants and thalassemia mutations	disease		https://globin.bx.psu.edu/hbvar/
Helminth.net	collection of worm-related databases & analysis tools	helminths worm		http://www.helminth.net
Heme Protein Database	Heme types, protein structures, axial ligands and Em values			http://hemeprotein.info/heme.php
Hemolytik	database of experimentally validated hemolytic and non-hemolytic peptides	peptide		http://crdd.osdd.net/raghava/hemolytik
HieranoiDB	web interface that provides hierarchical groups of orthologs inferred by the Hieranoid algorithm for a representative set of proteomes	proteome		https://hieranoidb.sbc.su.se
HistoneDB 2.0
HitPredict	database of protein-protein interactions
HmtDB - Human Mitochondrial DataBase	database of Human Mitochondrial Genomes, annotated with population data, and a set of bioinformatics tools, able to produce site-specific variability data and to automatically characterize newly sequenced human mitochondrial genomes	human mitochondrion genomics database Biomedical		https://www.hmtdb.uniba.it/
HoPaCI-db The Host-Pathogen and Coxiella Interaction database	database of interactions between host-pathogen-related elements such as biomolecules and other factors	pathogen Pseudomonas aeruginosa Coxiella burnetii		http://mips.helmholtz-muenchen.de/HoPaCI
Hollywood	RNA splicing database	RNA		http://hollywood.mit.edu/	proprietary license
HomoloGene	automated system for constructing putative homology groups from the complete gene sets of a wide range of eukaryotic species	homology gene	English	https://www.ncbi.nlm.nih.gov/homologene
Homology-derived Secondary Structure of Proteins	protein database
HumHot
Human Ageing Genomic Resources	A collection of databases and tools designed to help researchers study the genetics of human ageing using modern approaches such as functional genomics, network analyses, systems biology and evolutionary analyses.	gene disease		https://genomics.senescence.info/
Human Endogenous Retrovirus database	human endogenous retrovirus database	retrovirus human		https://herv.img.cas.cz/
Human Induced Pluripontent Stem Cell Initiative	The Human Induced Pluripotent Stem Cell Initiative (HipSci) isf establishing a large catalogue of human iPSC lines, arguably the most well characterized collection to date.	disease		http://www.hipsci.org/
Human Intermediate Filament Data base	the Human Intermediate Filament Database (http://www.interfil.org) was initiated by the Human Genetics Unit, University of Dundee in 2001 and was revised by the Centre for Molecular Medicine and the Bioinformatics	disease		http://www.interfil.org/
Human Metabolome Database	database of human metabolites	Homo sapiens metabolite	English	https://hmdb.ca
Human Olfactory Data Explorer	database of human olfactory receptors			http://genome.weizmann.ac.il/horde/
Human Prostate Gene DataBase	PGDB is a curated and integrated database of human genes related to the prostate and prostatic diseases.	prostate disease		http://www.urogene.org/pgdb/
Human Protein Atlas	database of human proteins			http://www.proteinatlas.org/	Creative Commons Attribution-ShareAlike 3.0 Unported
Human Protein Reference Database	online database of proteins	protein		http://www.hprd.org/
Human Proteinpedia
Human proteome project	scientific project coordinated by the Human Proteome Organization			http://www.thehpp.org
Human-transcriptome database for alternative splicing				http://h-invitational.jp/h-dbas/
Hymenoptera Genome Database	informatics resource that provides tools for data mining, sequence searching, browsing, annotation and data download genome of insects of the order Hymenoptera	Hymenoptera		http://HymenopteraGenome.org
Hymenoptera Online				https://hol.osu.edu/
H²DB	database of genetic heritability for various species with trait-associated genomic loci	heritability locus		http://tga.nig.ac.jp/h2db
IBIS	On-line database of protein interactions			http://www.ncbi.nlm.nih.gov/Structure/ibis/ibis.cgi
ICEberg	integrated database that provides comprehensive information about integrative and conjugative elements (ICEs) found in bacteria	Integrative and conjugative element		https://bioinfo-mml.sjtu.edu.cn/ICEberg2/index.php
ICTV Taxonomy database	naming and classification virus database	virus classification		http://ictv.global
IDEAL	Intrinsically Disordered proteins with Extensive Annotations and Literature	Intrinsically disordered proteins		https://www.ideal-db.org/
IGRhCellID	integrates tools and profiles of genomic alterations for cell identification and genetic features of human cell lines	human cell line		http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi
IMG-ABC	comprehensive data mart of biosynthetic gene clusters (BGC) for secondary metabolite compounds (SMs), predicted from all isolate genomes in IMG	Metabolic gene cluster		https://img.jgi.doe.gov/cgi-bin/abc-public/main.cgi
IMG/M	provides support, analysis and distribution of microbial genome and metagenomes datasets for comparative analysis	microbial genome metagenome microbiome		https://img.jgi.doe.gov
IMG/VR	database has provided access to the largest collection of viral sequences obtained from (meta)genomes.	genome virus		https://img.jgi.doe.gov/cgi-bin/vr/main.cgi
IMGT/3Dstructure-DB	global reference in immunogenetics and immunoinformatics	immunogenetics		https://www.imgt.org
IMGT/LIGM-DB	database of immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences, from human and other vertebrate species	immunoglobulin nucleotide cell		https://www.imgt.org/ligmdb/
IMOTdb	repertoire of spatially interacting motifs with protein structures	protein structure		http://caps.ncbs.res.in/imotdb
IMPC	international effort by 19 research institutions to identify the function of every protein-coding gene in the mouse genome	mouse genome protein-coding gene		https://www.mousephenotype.org
INFRAFRONTIER	offers access to mammalian models for the development, systemic phenotyping, archiving, distribution and biomedical research	model organism mammal genome		https://www.infrafrontier.eu
IRESite	collection of data concerning the Internal Ribosome Entry Segments (IRES) both of viral and cellular origin	internal ribosome entry site		http://www.iresite.org
IUBMB Nomenclature database	recommendations on biochemical & organic nomenclature, symbols & terminology	chemical nomenclature		https://iubmb.qmul.ac.uk
IUCN Red List	inventory of the global conservation status of biological species			https://www.iucnredlist.org/
IUPHAR/BPS Guide to PHARMACOLOGY	pharmacology database	Michaelis constant protein drug brown rat Homo sapiens house mouse angiotensin I	English	http://www.guidetopharmacology.org	Creative Commons Attribution-ShareAlike 4.0 International
IWDB Interaction Web DataBase	This is a database containing published data on species interaction networks.			http://www.ecologia.ib.usp.br/iwdb/index.html
Identifiers.org	provides a set of services to life science data using Compact Identifiers in the form of URL's	identifier		https://identifiers.org	proprietary license
Image Data Resource	biological database	microscopy		https://idr.openmicroscopy.org/
Images of amphibians of Hong Kong	database of amphibian species de Hong Kong	Amphibia Hong Kong	English	https://www.biosch.hku.hk/ecology/hkamphibians/index.htm#
Immune Epitope Database and Analysis Resource	free resource offering access to experimental data characterizing antibody and T cell epitopes involved in infectious disease, allergy, autoimmunity, and transplant.			http://www.iedb.org/
ImmunoBase	ImmunoBase is a web based resource focused on the genetics and genomics of immunologically related human diseases.	gene immunology disease		https://genetics.opentargets.org/immunobase
Imprinted Genes and Related Effects	The imprinted gene and parent-of-origin effect database, consists of two sections. One section catalogues the current literature on imprinted genes in humans and animals.	gene disease		https://corpapp.otago.ac.nz/gene-catalogue/
InSatDb	Insect microsatellite database allows users to obtain microsatellites annotated with size; genomic location; nature; and sequence composition.	insect microsatellite		http://cdfd.org.in/INSATDB/home.php	proprietary license
Index Fungorum	international project to index all formal (scientific) names in the kingdom of Fungi	fungus	English	http://www.indexfungorum.org/
Indian Genetic Disease Database	Disease Database in India
Indiana Plant Atlas	website and online database about the vascular plants of Indiana	flora plant phytogeography wild plant	English	https://indiana.plantatlas.usf.edu/
Influenza Research Database	integrative and comprehensive publicly available database and analysis resource to search, analyze, visualize, save and share data for influenza virus research			http://www.fludb.org/%20IRD
Info Flora				https://www.infoflora.ch/fr/
Inparanoid
Insect Color Database ICDB	Insect color database	insect color beetles Lepidoptera Odonata entomologist Taxås	English	https://insectcolor.com/about/
InsectBase	databases of insect gene resources	insect		http://v2.insect-genome.com
IntAct protein interaction database	database of protein interaction data			http://www.ebi.ac.uk/intact/	Creative Commons Attribution 4.0 International
IntEnz	biological database; expands official version of the Enzyme Nomenclature system	enzyme activity enzyme chemical reaction nomenclature classification scheme		https://www.ebi.ac.uk/intenz/ http://www.ebi.ac.uk/intenz
Integrated Microbial Genomes System	management, annotation and analysis platform for genome and metagenome datasets provided by the Joint Genome Institute (JGI)	genome metagenome		https://img.jgi.doe.gov/cgi-bin/m/main.cgi
InterActive Fly	cyberspace guide to Drosophila development and metazoan evolution	Drosophila Metazoa development evolution		https://www.sdbonline.org/sites/fly/aimain/1aahome.htm
InterPro	database of protein families, domains and functional sites	biology		http://www.ebi.ac.uk/interpro/ https://www.ebi.ac.uk/interpro/
InterRNA	database of base interactions in RNA structures annotated using the programs NASSAM and COGNAC	RNA		http://211.25.251.163/interrna
Interferome	This database is an upgrade of the original database and contains type I, II and III interferon (IFN) regulated genes, manually curated from publicly available microarray datasets.	gene disease		http://www.interferome.org/	proprietary license
International Fossil Plant Names Index	global registry of scientific names of fossil organisms covered by the International Code of Nomenclature for Algae, Fungi, and Plants and International Code of Zoological Nomenclature, and their authors	paleobotany	English	http://www.ifpni.org/	Creative Commons Attribution 4.0 International
International HapMap Project	website			http://hapmap.ncbi.nlm.nih.gov/
International Knockout Mouse Consortium	scientific project organization
International Mouse Phenotyping Consortium
International Nucleotide Sequence Database Collaboration				http://insdc.org
International Protein Index	A no longer updated database covering information about the proteomes of humans, mice and other animals
Introduced species in the Canary Islands	database that provides information about all introduced species in the Canary Islands included amphibians and reptiles	Amphibia Canary Islands Spain introduced species Reptilia	Spanish	https://www.biodiversidadcanarias.es/exos/
Intronerator	gene expression
Invasive Plant Atlas of the United States				https://www.invasiveplantatlas.org/index.html
Inxight: Drugs Database	comprehensive portal for drug development information			https://drugs.ncats.io/
Isfinder	This database provides a list of insertion sequences (IS) isolated from bacteria and archae	bacteria Archaea		https://www-is.biotoul.fr/about.php
Islander	biological database	mobile genetic element		https://indiana.edu/~islander
Islander Database of Genomic Islands	Database on canonical genomic islands			http://bioinformatics.sandia.gov/islander/	proprietary license
IsoBase	Functionally related proteins across PPI networks			http://groups.csail.mit.edu/cb/mna/isobase/
Isoptera Species File	online biological database			https://isoptera.speciesfile.org/
Izeltlabuak.hu				https://www.izeltlabuak.hu/
JASPAR	open-access database storing curated, non-redundant transcription factor (TF) binding profiles	transcription factor DNA		http://jaspar.genereg.net	open access
Japanese Red List	list of threatened species	conservation status
JaponicusDB	Schizosaccharomyces japonicus genome database	genomics Schizosaccharomyces japonicus		https://www.japonicusdb.org/
JenAge Ageing Factor Database - AgeFactDB	aimed at the collection and integration of ageing phenotype and lifespan data	human ageing disease		http://agefactdb.jenage.de/
Jenalib	dissemination of information on three-dimensional biopolymer structures with an emphasis on visualization and analysis	biopolymer macromolecule		http://jenalib.leibniz-fli.de
KIDFamMap: Kinase-inhibitor-disease family map	Kinase-inhibitor-disease family map			http://gemdock.life.nctu.edu.tw/KIDFamMap/
KLIFs	Kinase-ligand Interaction Fingerprints and Structures			https://klifs.net/
KNApSAcK	species-metabolite relationship database		English	http://kanaya.naist.jp/KNApSAcK/
KNOTTIN database	provides information about knottin sequences, structures, functions and evolution, bibliographic data and computational tools for ICKs.	molecular knots		https://www.dsimb.inserm.fr/KNOTTIN/
KaPPA-View4
Kansas Wildflowers & Grasses				http://www.kswildflower.org/
KinG: Kinases in Genomes	collection of Ser/Thr/Tyr specific protein kinases and similar sequences encoded in the completed genomes of eukaryotes prokaryotes and viruses	kinase genome		http://king.mbu.iisc.ernet.in
KnotProt	Proteins with Topological knots and slipknots			https://knotprot.cent.uw.edu.pl/
Kyoto Encyclopedia of Genes and Genomes	collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances		English Japanese	http://www.genome.jp/kegg/	proprietary license
L1Base	is a dedicated database containing putatively active LINE-1 (L1) insertions residing in human and rodent genomes	LINE1		http://l1base.charite.de/l1base.php	proprietary license
LIAS light	A Database for Rapid Identification of Lichens	lichen		http://liaslight.lias.net/
LIAS names	A Database with Names of Lichens, Lichenicolous Fungi and Non-Lichenized Ascomycetes	lichen		http://liasnames.lias.net/
LNCediting	RNA editing sites in lncRNAs from human, monkey, mouse and fly	RNA		http://bioinfo.life.hust.edu.cn/LNCediting
LNCipedia	public database for long non-coding RNA (lncRNA) sequence and annotation	long non-coding RNA		https://lncipedia.org	proprietary license
LOTUS	natural product database		English	https://search.nprod.net/
LOX-DB - LipOXygenases DataBase	Due to their involvement in several diseases like cancer, inflammation, fever or arthritis, a lot of research is done on lipoxygenases yielding information about sequence, structure and function of these proteins.			http://www.glycosciences.de/spec/lox-db/
LPSN	online database that provides accurate names and info on the nomenclature of prokaryotes according to ICNB	prokaryotes nomenclature	English	https://www.bacterio.net	Creative Commons Attribution-NonCommercial 4.0 International
LactMed	online database of drug interactions with lactation	lactation drug		https://www.ncbi.nlm.nih.gov/books/NBK501922/
Laminin database	database of non-collagenous extracellular matrix proteins			http://www.lm.lncc.br/
LarvalBase				http://www.larvalbase.org/
Latin American and Caribbean Center on Health Sciences Information	on-line bibliographic database in medicine and health sciences			https://bvsalud.org/es/
Legume Information System	online resources and exploratory tools for legume researchers and breeders
Legume Information System	database about legume traits			https://legumeinfo.org/
Leiden Open Variation Database	open source database			http://www.lovd.nl/	GNU General Public License, version 3.0
LenVarDB-Database of length variant protein domains	Database of length variantion in protein domains			http://caps.ncbs.res.in/lenvardb/
Les Espèces exotiques envahissantes en outre-mer				https://especes-envahissantes-outremer.fr/base-especes-exotiques-envahissantes/
Library of Apicomplexan Metabolic Pathways	Database of apicomplexan metabolic pathways			http://www.llamp.net/	free content
Libro Rojo de Uzbekistán				https://redbook.uz/en-us
LifeDB	database for information on protein localization, interaction, functional assays and expression			http://www.lifedb.de/
LincSNP	database to store and annotate disease or phenotype-associated variants	polymorphism		http://bio-bigdata.hrbmu.edu.cn/lincsnp
LinkProt	database of information on protein chains and link-forming complexes	protein structure		https://linkprot.cent.uw.edu.pl/
List of plant species in China (2022 Edition)					Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International
Liste der Kakteenarten in der Roten Liste gefährdeter Arten	Wikimedia list article
LitCovid	database of COVID-19 litereature	COVID-19 LitCovid SARS-CoV-2		https://www.ncbi.nlm.nih.gov/research/coronavirus/
Living Plant Collections Database	biodiversity database			http://db.plantentuinmeise.be/RESEARCH/COLLECTIONS/LIVING/LIVCOL/index.html	proprietary license
LncRNADisease database	Long noncoding RNAs (lncRNAs) represent the RNAs that have a size of 200 nucleotides and lack the capability of protein-coding.	disease		http://www.cuilab.cn/lncrnadisease
LncRNAWiki	wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs	long non-coding RNA		https://ngdc.cncb.ac.cn/lncrnawiki1/index.php/Main_Page
LncRNAdb	database of RNAs	long non-coding RNA
LocDB				https://www.rostlab.org/services/locDB/	proprietary license
Long non-coding RNA database				http://www.lncrnadb.org	proprietary license
Lowe Syndrome Mutation Database	The Lowe Syndrome Mutation Database is now being maintained by the National Center for Biotechnology Information (NCBI) at the National Institutes of Health.	oculocerebrorenal syndrome disease		https://research.nhgri.nih.gov/lowe/
LumbriBASE	Lumbricus rubellus genome project and annelid expressed sequence tag (EST) database	Lumbricus rubellus expressed sequence tag Annelida		http://www.earthworms.org
Lygaeoidea Species File	online biological database	Lygaeoidea	English	http://lygaeoidea.speciesfile.org/HomePage/Lygaeoidea/HomePage.aspx
MALISAM: Manual ALIgnments of Structurally Analogous Motifs	Manual alignments for structurally analogous motifs in proteins			http://prodata.swmed.edu/malisam/
MANET database	bioinformatics database			http://www.manet.uiuc.edu/	proprietary license
MEROPS	online database for peptidases	peptidase		http://merops.sanger.ac.uk/	GNU Lesser General Public License
METAGENassist	web server for comparative metagenomic analysis			http://www.metagenassist.ca/METAGENassist/faces/Home.jsp
METscout	database brings together metabolism and gene expression landscapes.	metabolism gene expression		http://metscout.mpg.de/
MG-RAST	open portal for processing, analyzing, sharing and disseminating metagenomic datasets	metagenomics		https://www.mg-rast.org
MGAN	provides microbial genome sequence data and training in the use of the online gene and genome analysis toolkit	microbial genome		https://mgan.geni-act.org
MGnify	Microbiome database			https://www.ebi.ac.uk/metagenomics/
MICdb	Microsatellites database			http://micas.cdfd.org.in/
MINAS	tool to classify metal ion binding pockets in nucleic acids by statistics	nucleic acids		http://www.minas.uzh.ch/	proprietary license
MIPModDB
MMDB	database of biomolecular structures	biomolecular structure		https://www.ncbi.nlm.nih.gov/Structure
MODOMICS				http://genesilico.pl/modomics/
MOPED	Multi-Omics Profiling Expression Database			https://www.proteinspire.org/MOPED/
MSY Breakpoint Mapper	A database of sequence-tagged sites (STSs) and a user interface for mapping partial deletions in the male-specific region of the human Y chromosome (MSY).	disease		http://breakpointmapper.wi.mit.edu/
MaizeGDB	database about the genetics of corn (Zea mays)	plant genome		https://www.maizegdb.org/
MalaCards: The human disease database	Is an integrated database of human maladies and their annotations, modeled on the architecture and richness of the popular GeneCards database of human genes.	disease		https://www.malacards.org/
Malaysia Biodiversity Information System	information system for species in Malaysia	species	English	https://www.mybis.gov.my/
Mammalian promoter database
Manteia	data mining system that allows the comparison of embryological, expression, molecular and etiological data from different species to identify new functional and structural correlations and gene-disease associations	gene expression		http://manteia.igbmc.fr
Mantis database	index of English-language and selected other-language biomedical journal articles
Mantodea Species File				http://mantodea.speciesfile.org/HomePage/Mantodea/HomePage.aspx
Mantophasmatodea Species File	online biological database			https://mantophasmatodea.speciesfile.org/
Map of Life	web mapping service of species' distribution		English	https://mol.org
Mapper(2)	Database for putative Transcription Factor Binding Sites			http://genome.ufl.edu/mapperdb
MarinLit	database of the marine natural products literature	marine natural product		https://marinlit.rsc.org
MatrixDB	database			http://matrixdb.univ-lyon1.fr/
MeDReaders	database for transcription factors that bind to methylated DNA	DNA		http://medreader.org/home
MeMotif	Linear motifs in alpha-helical transmembrane proteins			http://projects.biotec.tu-dresden.de/memotif
MeT-DB	database of transcriptome methylation in mammalian cells	mammal transcriptome methylation microRNA database RNA		http://compgenomics.utsa.edu/methylation
Medical Subject Headings	Controlled vocabulary for the purpose of indexing journal articles and books in the life sciences.	medicine	English	http://www.nlm.nih.gov/mesh/ https://www.nlm.nih.gov/mesh/meshhome.html
MedlinePlus	online information service produced by the United States National Library of Medicine		English	https://www.medlineplus.gov https://www.nlm.nih.gov/medlineplus/
MegaMotifbase: Structural Motifs Database	Structural motifs in protein families and superfamilies			http://caps.ncbs.res.in/MegaMotifbase/index.html
MemMoRF database of membrane associated disordered protein regions	MemMoRF is a comprehensive database of transmembrane and membrane associated proteins with MemMoRFs: regions that undergo disorder-to-order transition or large conformational changes upon membrane association			https://memmorf.hegelab.org/
Membranome database	Online database of protein
MetPA				http://www.metaboanalyst.ca/
MetaBase	MediaWiki website containing a biological database
MetaCrop	database about 60 major metabolic pathways in various crop plants	plant metabolism		https://metacrop.ipk-gatersleben.de/apex/f?p=269:111::::::
MetaCyc	biomolecular database			http://metacyc.org/	proprietary license
MetaboAnalyst	online tools for metabolomic analysis			http://www.metaboanalyst.ca/
MetaboLights	Repository for metabolomics data.		English	http://www.ebi.ac.uk/metabolights	free content
MetaboMiner	software tool to aid in rapid and efficient metabolite identification from complex mixtures using 2D NMR spectroscopy			http://wishart.biology.ualberta.ca/metabominer/
Metabolomics Workbench	Database of metabolomics data			http://www.metabolomicsworkbench.org/
MetalPDB	online biological database			https://metalpdb.cerm.unifi.it/
MetalPDB	database which collects and allows easy access to the knowledge on metal sites in biological macromolecules	biological macromolecule metal enzyme macromolecule		https://metalpdb.cerm.unifi.it/getMetalEnzymes
MethBank	DNA methylome programming database that integrates the genome-wide single-base nucleotide methylomes of gametes and early embryos in different model organisms			http://dnamethylome.org/	proprietary license
MethDB
MiRGator	portal of microRNA diversity, expression profiles, target relationships, and various supporting tools	microRNA		http://mirgator.kobic.re.kr	proprietary license
MiRNEST 2.0	collection of animal, plant and virus microRNA data	microRNA		http://rhesus.amu.edu.pl/mirnest/copy
MiRTarBase	database on microRNAs and their targets			http://mirtarbase.mbc.nctu.edu.tw/index.php	proprietary license
MiST	microbial signal transduction database	genome		https://mistdb.com/
Michigan Flora	online database			https://michiganflora.net/
MicroRNA and microRNA target database
MicroScope	integrated platform dedicated to the methodical updating of microbial genome annotation and to comparative analysis	microbial genome		https://mage.genoscope.cns.fr/microscope/home/index.php
Microarray databases
MicrobeDB	biological database	microorganism	English	http://microbedb.jp/MDB/ https://microbedb.jp/	Creative Commons Attribution 4.0 International
MicrobesOnline	community resource and Web-based tools for comparative genomics	comparative genomics		http://microbesonline.org	proprietary license
MicrosporidiaDB	genomic databases of genomes of microsporidia belongs to the National Institute of Allergy and Infectious Diseases	Microsporidia		https://microsporidiadb.org/micro/app
Microworld	website on amoeboid organisms			https://www.arcella.nl/
Mid-Atlantic Herbaria Consortium	website of the Mid-Atlantic Herbaria Consortium			https://midatlanticherbaria.org/portal/index.php
MitoAge	database on mtDNA data integrated with longevity records			http://www.mitoage.info/	Creative Commons license
MitoCarta	inventory of human and mouse mitochondrial genes			https://www.broadinstitute.org/mitocarta/mitocarta30-inventory-mammalian-mitochondrial-proteins-and-pathways
Mitochondrial Disease Database	database of clinical features seen in mitochondrial diseases			http://mitodb.com/
Mitochondrial Spatio-Temporal Expression Database	database focuses on the dynamic of mitochondrial protein formation through global mRNA analyses	mitochondrial protein database messenger RNA Saccharomyces cerevisiae DNA microarray		https://www.dsimb.inserm.fr/dsimb_tools/mitgene/
MobiDB	database			http://mobidb.bio.unipd.it/
ModBase	database of comparative protein structure models, calculated by the modeling pipeline ModPipe	protein structure		https://modbase.compbio.ucsf.edu
MolMovDB	describes the motions that occur in proteins and other macromolecules	macromolecule		http://molmovdb.org
MolliGen	provides genomic data, homology relationship, statistics, metabolic pathways, and tools for exploring and comparing genomes of bacteria of the class Mollicutes	genomics Mollicutes		http://services.cbib.u-bordeaux.fr/molligen
MolluscDB	the most comprehensive genomics database specifically for molluscs, by integrating current large amounts of genomic resources and providing convenient tools for multi-level integrative and comparative analyses	Mollusca genomics		http://mgbase.qnlm.ac/home
MonarchBase	integrated database of genomic, proteomic and biological information of monarch butterfly	Danaus plexippus		http://monarchbase.umassmed.edu
Monoallelic Expression (MAE)	masked in polyclonal samples, and obtaining monoclonal cell populations is challenging for most tissue types, particularly so in vivo.	gene disease		https://mae.hms.harvard.edu/aboutmae.php
MoonProt A Database for Moonlighting Proteins	Moonlighting proteins			https://www.flymine.org//come
Morphbank	biological database			http://www.morphbank.net/
Moths of India	Indian online database on moths		English	http://www.mothsofindia.org/
Moths of North America	Moths of North America online database		English	http://mothphotographersgroup.msstate.edu/
Mouse Genetics Project	mutant mouse production and phenotyping programme
Mouse Genome Database	resource for the laboratory mouse, provides integrated genetic, genomic, and biological data			http://www.informatics.jax.org
Mouse Genome Informatics	free, online database and bioinformatics resource		English	http://www.informatics.jax.org/
Mouse Pathology Ontology	database of histopathology photomicrographs and macroscopic images derived from mutant or genetically manipulated mice	histopathology		http://www.pathbase.net	Creative Commons Attribution 3.0 Unported
Mouse Phenome Database	online biological database			http://phenome.jax.org
Mouse Phenome Database	database of experimental trait data, genotypic variation, protocols and analysis tools for mouse genetic studies.	Mus phenome ontology database		https://phenome.jax.org/
Mouse gene expression database	free online biological database			http://www.informatics.jax.org/expression.shtml
MouseNet v2	web server to generate functional predictions for laboratory mouse and 8 other model vertebrates used in research projects	model organism		http://www.inetbio.org/mousenet
Mousebook	databases and web portal that provides access to information about mutant mouse lines held as live or cryopreserved stocks at MRC Harwell	mouse model		https://archive.har.mrc.ac.uk/index
MulPSSM A searchable database of multiple PSSMs of structural and sequence families	Representation of multiple sequence alignments of protein families in terms of Position Specific Scoring Matrices (PSSMs) is commonly used in the detection of remote homologues			http://mulpssm.mbu.iisc.ernet.in/
Mushroom Observer	website			http://mushroomobserver.org
MvirDB	microbial data warehouse of protein toxins, virulence factors, and antibiotic resistance genes for bio-defense applications.	toxin virulence factor antibiotic-resistance gene bacteria		http://mvirdb.llnl.gov
MyVariant.info	Variant Annotation as a Service			http://myvariant.info/	Apache License, Version 2.0
MycoBank	online database for fungi		English	http://www.mycobank.org
MycoCosm	provides data access, visualization, and analysis tools for comparative genomics of fungi	fungus genome		https://mycocosm.jgi.doe.gov/mycocosm/home
NAPP	nucleic acid phylogenetic profiling database	RNA		http://napp.u-psud.fr/
NBDB Nucleotide Binding Database	NBDB database provides profiles of Elementary Functional Loops (EFLs) involved in binding of nucleotide-containing ligands.			http://nbdb.bii.a-star.edu.sg/
NCBI Assembly	genome database			https://www.ncbi.nlm.nih.gov/assembly/
NCBI Epigenomics	former epigenomics database			http://www.ebi.ac.uk/pdbsum
NCBI Gene	database for gene-specific information			http://www.ncbi.nlm.nih.gov/gene
NCBI Genome	rganizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.	genome		https://www.ncbi.nlm.nih.gov/genome
NCBI Nucleotide	Nucleotide Database of the National Center for Biotechnology Information			http://www.ncbi.nlm.nih.gov/nuccore
NCBI Protein	Protein Database of the National Center for Biotechnology Information			https://www.ncbi.nlm.nih.gov/protein
NCBI Viral genomes	provides genome sequence data and information of viruses and viroids	virus		https://www.ncbi.nlm.nih.gov/genome/viruses
NCI-Nature Pathway Interaction Database				http://pid.nci.nih.gov/
NDB	contains information about experimentally-determined nucleic acids and complex assemblies	nucleic acids		http://ndbserver.rutgers.edu
NDF-RT	A database by the Department of Veterans Affairs maintaining FDA approved drug concepts and their interactions		English	https://rxnav.nlm.nih.gov/ https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDFRT/
NEMBASE	Nematode sequence and functional data database	Nematoda genomics		http://www.nematodes.org
NESbase	Protein export from the nucleus is often mediated by a Leucine-rich nuclear export signal (NES) consisting of 4-5 hydrophobic residues within a region of approximately 10 amino acids.			http://www.cbs.dtu.dk/databases/NESbase/
NGSmethDB	methylation data derived from next-generation sequencing data			http://bioinfo2.ugr.es:8080/NGSmethDB/	proprietary license
NHPRTR	resource of deep sequencing complete transcriptomes (RNA-seq) from multiple non-human primates (NHPs) species	transcriptome Quadrumana		http://nhprtr.org
NIAID ChemDB	biological database
NIH Genetic Testing Registry	The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers.	disease gene		https://www.ncbi.nlm.nih.gov/gtr/
NMPdb - Nuclear matrix associated proteins database	Nuclear matrix associated proteins database			https://www.rostlab.org/services/NMPdb/
NOAA Fisheries Species Directory				https://www.fisheries.noaa.gov/species-directory
NONCODE	integrated knowledge database dedicated to non-coding RNAs			http://v6.noncode.org/
NORINE	A database of nonribosomal peptides			https://bioinfo.lifl.fr/norine/
NPD - Nuclear Protein Database	The NPD is a curated database that contains information on more than 1200 vertebrate proteins that are thought, or are known, to localise to the cell nucleus			http://npd.hgu.mrc.ac.uk/user/
NRichD Database	sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection			http://proline.biochem.iisc.ernet.in/NRICHD/
NSW Flora Online	NSW Flora Online database		English	http://plantnet.rbgsyd.nsw.gov.au/floraonline.htm
NT Flora	Northern Territory (Australia) Flora online		English	http://eflora.nt.gov.au/home
Nanomaterial Registry	Repository for nanosafety data.			https://www.nanomaterialregistry.org/
National Biodiversity Network	entity in UK		English	http://www.nbn.org.uk
National Eye Institute Bank	NEIBank is a project for ocular genomics.	eye disease		https://neibank.nei.nih.gov/index.shtml
National Forensic DNA Database of South Africa	national DNA database of South Africa
Native Plants Database	online database of the Lady Bird Johnson Wildflower Center			https://www.wildflower.org/plants/index.php
Nature Conservation Agency of the Czech Republic	government agency in Czech Republic		Czech	http://www.ochranaprirody.cz https://www.ochranaprirody.cz/en/
NatureServe Explorer	online database providing information for more than 95,000 plants and animals in the United States and Canada, and more than 10,000 vegetation communities and ecological systems in the Western Hemisphere		English	https://explorer.natureserve.org/
Nearest Neighbor Database	set of nearest neighbor parameters for RNA folding	RNA folding		http://rna.urmc.rochester.edu/NNDB
Nederlands Soortenregister	Dutch database of species			https://www.nederlandsesoorten.nl/
Neotropical Birds Online			English Dutch French Haitian Creole Portuguese Spanish	https://neotropical.birds.cornell.edu/Species-Account/nb/home
Netherlands Bioinformatics for Proteomics Platform				http://www.nbpp.nl/
Netherlands species distributions	website with Netherlands species distribution data		Dutch	https://www.verspreidingsatlas.nl/
Netpath	Johns Hopkins University			http://www.netpath.org/	Creative Commons license
NetwoRx	web resource to store data from yeast chemogenomics experiments and identify connection of drug response to biological pathways and phenotypes	chemogenomics yeast		http://ophid.utoronto.ca/networx
Network Portal	database of gene transcription regulatory networks and enables exploration, annotation and comparative analysis	gene		http://networks.systemsbiology.net/
Network of Cancer Genes	web resource for systems-level properties of cancer genes and oncomirs
NeuroVault				http://neurovault.org/
Neuroscience Information Framework	inventory of web-based neurosciences data, resources, and tools
New York Flora Atlas	website on distribution of plants within New York State, as well as information on plant habitats, associated ecological communities, and taxonomy	flora phytogeography wild plant		https://newyork.plantatlas.usf.edu/
New Zealand Fossil Record Database	computer database for the New Zealand Fossil Record File			https://fred.org.nz/
New Zealand Organisms Register	catalogue of scientific names of New Zealand biota		New Zealand English	http://www.nzor.org.nz/	Creative Commons Attribution-NonCommercial-ShareAlike
New Zealand Threat Classification System Database	website and database for the New Zealand Threat Classification System	New Zealand Threat Classification System	English	https://nztcs.org.nz/	Creative Commons Attribution 4.0 International
Nextstrain	website for tracking viral evolution			https://nextstrain.org/
Non-B database
Nonindigenous Aquatic Species				https://nas.er.usgs.gov/default.aspx
NuBBEDB	biological natural products database	natural product
NucleaRDB	database of nuclear receptors
Nuclear Receptor Signaling Atlas
Nucleic Acid Database				http://ndbserver.rutgers.edu/
Nucleosome positioning region database	nucleosome positioning region database			https://srs6.bionet.nsc.ru/srs6/
O-GLYCBASE-DTU Health Tech	O-GLYCBASE is a database of glycoproteins with O-linked and C-linked glycosylation sites. Entries with at least one experimentally verified glycosylation site have been compiled from protein sequence databases and literature			https://services.healthtech.dtu.dk/
OGEE	contains gene essentiality datasets of species eukaryotes and prokaryotes and 931 cell lines	essential gene cell line		https://v3.ogee.info/#/home
OGRDB	a curated database of immunoglobulin and T cell receptor sequences inferred from immune receptor repertoires, together with supporting information describing the repertoires from which they were derived.	gene		https://ogrdb.airr-community.org/
OMA	A method for the inference of orthologs among complete genomes stored in a database	biology orthology protein		https://omabrowser.org/oma/about/ https://omabrowser.org/	Creative Commons Attribution 4.0 International
OMPdb	database			http://www.ompdb.org/
OPM	database of structures of protein monotopic and transmembrane protein complexes, peripheral and membrane-bound peptides	transmembrane protein
ORegAnno	Open regulatory annotation database	genome		http://www.oreganno.org/
Objetivos selectivos en la base de datos de tumorigénesis humana MSI-H	SelTarbase is a comprehensive mononucleotide repeat (MNR) mutation database. The primary data are derived from investigations of human microsatellite high-unstable (MSI-H) tumors of different organs.	disease		http://www.seltarbase.org/
Ocean Biodiversity Information System (OBIS)	online marine biology database			https://obis.org/
Odonata of India	Odonata of India online database		English	http://www.indianodonata.org/
OikoBase	hostes information of transcripts, proteins and genome-wide expression profiles about of Oikopleura dioica	Oikopleura dioica		http://oikoarrays.biology.uiowa.edu/Oiko
Oiseaux.net			French
Olfactory Receptor DataBase (ORDB)	Sequences for lfactory receptor-like molecules			https://senselab.med.yale.edu/ordb/
OnTheFly database	OnTheFly database is a systematic determination of Drosophila melanogaster transcription factor DNA-binding specificities	transcription factor Diptera Drosophila		https://bhapp.c2b2.columbia.edu/OnTheFly/
Online Mendelian Inheritance in Animals	catalogue/compendium of inherited disorders and other familial traits in 346 species non-laboratory animal	Mendelian inheritance		https://omia.org
Online Mendelian Inheritance in Man	Online catalog of human genes, with a particular focus on the gene-phenotype relationship.		English	https://www.omim.org	proprietary license
Ontobee	linked data server that facilitates ontology data sharing, visualization, query, integration, and analysis	ontology		http://www.ontobee.org https://ontobee.org/
Open PHACTS Discovery Platform	database for drug discovery	drug discovery
Open Reading Frames DB	database of ORF collections based on biological processes, cellular component, and molecular function	gene genomics clone protein		http://orf.thermofisher.com/
Open Regulatory Annotation Database
Open TG-GATEs	scientific database			http://toxico.nibiohn.go.jp/
Open Targets Genetics	comprehensive tool highlighting variant-centric statistical evidence to allow both prioritisation of candidate causal variants at trait-associated loci and identification of potential drug targets.	medication genetics		https://genetics.opentargets.org/
Open Targets Platform	comprehensive tool that supports systematic identification and prioritisation of potential therapeutic drug targets	medication disease		https://platform.opentargets.org/	Creative Commons CC0 License
OpenNeuro	neuroimaging database			https://openfmri.org https://openneuro.org	Public Domain Dedication and License v1.0 Esquiress Lyndsey Watson Copyright Dockets copyright © ls
OpenTrials	database with clinical trial data	medicine		https://fda.opentrials.net/search	Creative Commons CC0 License
Operon database	database with known and conserved operons in multiple species	operon		https://operondb.jp/
Organelle Genome Resources	organelle genomes provides curated sequence data and related information for the community to use as a standard.	genome organelle		https://www.ncbi.nlm.nih.gov/genome/organelle/
OriDB	catalogue of confirmed and predicted DNA replication origin sites	DNA Saccharomyces cerevisiae		http://pombe.oridb.org/	proprietary license
Orphanet	organization	rare disease	English French Spanish German Italian Portuguese Dutch Polish	https://orpha.net	Creative Commons Attribution-NoDerivs 3.0 Unported
OrthoDB	catalogue of orthologous protein-coding genes across vertebrates, arthropods, fungi, plants, and bacteria			https://www.orthodb.org/	Creative Commons Attribution 3.0 Unported
Orthologous MAtrix	database of orthologous genes across multiple species
OrtholugeDB-The Ortholog Database	OrtholugeDB provides ortholog predictions for completely sequenced bacterial and archaeal genomes from NCBI based on reciprocal best-BLAST hits, supplemented with further evaluation by the more precise Ortholuge method.
Orthoptera Species File	online taxonomic database		English	https://orthoptera.speciesfile.org/
OryGenesDB	database related to molecular data from external rice molecular resources	rice molecule complementary DNA gene		https://orygenesdb.cirad.fr/
P2CS	comprehensive database on proteins	protein two-component regulatory system		http://www.p2cs.org/
PAGER-CoV	pathways, annotated-lists, and gene signatures (PAGs) related to coronavirus diseases database	Coronavirus		http://discovery.informatics.uab.edu/PAGER-COV/
PALI-Phylogeny and ALIgnment of homologous protein structures	The database of Phylogeny and ALIgnment of homologous protein structures (PALI) contains structure-based sequence alignments and dendrograms based on information primarily derived from the structural alignments at domain level
PANAV
PANDIT	biological database of multiple sequence alignments and phylogenetic trees covering many common protein domains			https://www.ebi.ac.uk/research/goldman/software/pandit/	GNU Lesser General Public License, version 2.1
PANGOLIN	database of SARS-CoV-2 lineages			https://pangolin.cog-uk.io/	GNU General Public License, version 3.0
PANTHER	biological database
PANTHER-Classification System	resource/database for the evolutionary and functional classification of protein-coding genes from all domains of life.			http://www.pantherdb.org/
PASS2	provides alignments of proteins related at the superfamily level	protein structure		http://caps.ncbs.res.in/pass2
PATH Biobank	German biobank
PATRIC	information system designed to support the biomedical research community’s work on bacterial infectious diseases			http://www.patricbrc.org
PATRIC	provides data and analysis tools to biomedical research on bacterial infectious diseases	Pathosystem bioinformatics bacterial infectious disease		https://www.patricbrc.org	proprietary license
PCRPi-DB	Presaging Critical Residues in Protein interfaces - DataBase	protein		http://www.bioinsilico.org/cgi-bin/PCRPIDB/htmlPCRPI/home
PDBTM	collection to transmembrane proteins from PDB by the TMDET algorithm	transmembrane protein		http://coiledcoils.chm.bris.ac.uk/ccplus/search
PDBbind database				http://www.pdbbind-cn.org/
PDBe	European data center for the global PDB archive			https://www.ebi.ac.uk/pdbe/ http://www.ebi.ac.uk/pdbe/
PDBflex	database that explores the flexibility of protein structures by analyzing structural variations	protein structure		https://pdbflex.org
PDBj	provides archives of macromolecular structures and integrated tools	protein structure		https://pdbj.org
PDBsum	pictorial database of 3D structures in the Protein Data Bank	protein structure schematic diagram		http://www.ebi.ac.uk/pdbsum
PEDE	provides full-length cDNA clones and ESTs in pigs	complementary DNA pig		https://pede.dna.affrc.go.jp
PHI-base	Pathogen Host Interaction database			http://www-phi4.phibase.org/ http://www.phi-base.org
PIRSF- Protein Information Resource	The PIRSF is a network system of protein classification that reflects evolutionary relationships of full-length proteins and domains.			https://proteininformationresource.org/pirsf/
POSTAR3	database for exploring post-transcriptional regulation based on high-throughput sequencing data from different species	RNA Post-transcriptional regulation		http://111.198.139.65
PPD Protein pKa Database	The Protein pKa Database (PPD) v1.0 provides a compendium of protein residue-specific ionisation equilibria (pKa values), as collated from the primary literature, in the form of a web-accessible postgreSQL relational database.			http://www.ddg-pharmfac.net/ppd/PPD/pKahomepage.htm
PPDB	Plant Proteome Database			http://ppdb.tc.cornell.edu/
PPT-DB	database of protein properties
PREDITOR	predictor film
PRGdb database	database with pathogen receptor genes			http://prgdb.org/prgdb4/
PRINTS	molecular biology database
PROPHECY	provides quantitative information about phenotypes for the complete collection of deletion strains in yeast Saccharomyces cerevisiae	phenotype Saccharomyces cerevisiae		http://prophecy.lundberg.gu.se
PROSESS	system for validating protein structures			http://www.prosess.ca/
PROSITE	database of protein domains, families and functional sites		English	http://prosite.expasy.org/
PSCDB	protein structural change upon ligand binding database	protein		http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb
PSI-SGKB	protein structure initiative structural genomics knowledgebase	synthetic biology		https://psi-structuralgenomics.org
PSORTdb				http://db.psort.org/
PTGL	web server and database of protein structure topologies	Protein topology		http://ptgl.uni-frankfurt.de
PaVE	provides integrated resources for the analysis of papillomavirus genome sequences and related information	Papillomaviridae		https://pave.niaid.nih.gov
Paleobiology Database	online resource about fossil animals, plants, and microorganisms	paleontology		http://paleobiodb.org/	Creative Commons Attribution 4.0 International
Palynodata	online palynological database	palynology		https://paleobotany.ru/palynodata
Palynological Database	an online publication on recent pollen		English	https://www.paldat.org/
PanTHERIA	biological database			https://ecologicaldata.org/wiki/pantheria
Panarctic Flora	online flora on panarctic region		English	http://panarcticflora.org/
PanglaoDB	database for single-cell RNA sequencing experiments			https://panglaodb.se/index.html
ParameciumDB	database for Paramecium species	Paramecium genomics		https://paramecium.i2bc.paris-saclay.fr/
Paraneoptera Species File Online	online biological database			http://paraneoptera.speciesfile.org/HomePage/Paraneoptera/HomePage.aspx
Parkinsons Disease Gene Ontology Initiative	focused on Gene Ontology (GO) annotation of Parkinson's Disease-relevant proteins			http://www.ucl.ac.uk/functional-gene-annotation/neurological
Pathema
Pathguide	pathway resource List is a meta-database that provides an overview of more than 190 web-accessible biological pathway and network databases.	biological pathway		http://pathguide.org/
PathoPhenoDB	database connecting pathogens to phenotypes	pathogen		http://patho.phenomebrowser.net/
Pathway Commons	database			http://www.pathwaycommons.org/	GNU Lesser General Public License, version 3.0
Patome
PeanutBase	database about peanut genetics			https://peanutbase.org/
Penstemon Database	online biological database	Penstemon	English	https://wolfelab.asc.ohio-state.edu/database.php
Peptaibol	The Peptaibol Database is a sequence and structure resource for the unusual class of peptides known as peptaibols.			http://peptaibol.cryst.bbk.ac.uk/home.shtml
PeptideAtlas
PeroxiBase
PeroxiRedoxin classification Index	PeroxiRedoxin classification indEX			http://csb.wfu.edu/prex.test/
Peroxiredoxin classification index
PeroxisomeDB	biological database	peroxisome		http://www.peroxisomedb.org/
Pfam	database of protein families		English	http://pfam.xfam.org/	GNU Lesser General Public License
PhEVER	provides evolutionary and phylogenetic information to analyse the nature of virus–virus and virus–host lateral gene transfers	horizontal gene transfer phylogenetics		http://pbil.univ-lyon1.fr/databases/phever
PharmGKB	online biological database			https://www.pharmgkb.org/
Phasmida Species File			English	http://phasmida.speciesfile.org/HomePage/Phasmida/HomePage.aspx
PhenoModifier: a genetic modifier database for elucidating the genetic basis of human phenotypic variation.	The database can be searched either by human gene name, by variant or by disease name.	disease gene		https://www.biosino.org/PhenoModifier/
Phenocarta	online database of gene-disease relationships			http://chibi.ubc.ca/Gemma/phenotypes.html	Creative Commons Attribution-ShareAlike 3.0 Unported
Phenol-Explorer				http://phenol-explorer.eu/
PhenomicDB				http://www.phenomicdb.de
Phenoscape		phenotype		https://kb.phenoscape.org/
PhosPhAt	arabidopsis protein phosphorylation site database	Arabidopsis protein		https://phosphat.uni-hohenheim.de/
Phosida	phosphorylation site database			http://141.61.102.18/phosida/index.aspx
Phospho.ELM
Phospho3D	Database of 3D structures of phosphorylation sites derived from Phospho.ELM			http://www.phospho3d.org/
PhosphoSitePlus				https://www.phosphosite.org/homeAction.action
PhyloFacts	The PhyloFacts resource contains pre-calculated structural and phylogenomic analysis of over 15,000 protein family "books" across the Tree of Life.			http://phylogenomics.berkeley.edu/
PhylomeDB	public database for catalogs of gene phylogenies			http://phylomedb.org/
Physiotherapy Evidence Database	physical therapy-centered bibliographic database			http://www.pedro.org.au/
PhytoPath	integrates genome-scale data from plant pathogen species with information about the phenotypes of host infection	plant pathogen		http://www.phytopathdb.org
PiSITE	database of interaction sites of proteins using the complex structures in PDB	protein-protein interaction		https://pisite.sb.ecei.tohoku.ac.jp/cgi-bin/top.cgi
Pladias				https://www.pladias.cz/
PlanMine	web resource of data & tools to mine planarian biology	Planaria		http://planmine.mpi-cbg.de
Plant DNA C-values Database
Plant Database	online database of plant taxa	flora plant	English	https://plantdatabase.kpu.ca/plant/search.gsp https://plantdatabase.kpu.ca/
PlantCollections
PlantFiles	online plant database	ornamental plant	English	https://davesgarden.com/guides/pf/
PlantGDB	database for comparative plant biology	plant genomics		http://plantgdb.org/
PlantPIs	web querying system for a database collecting plant protease inhibitors data	plant		http://plantpis.ba.itb.cnr.it/
PlantProm DB	A database of plant promoter sequences	plant RNA		http://linux1.softberry.com/berry.phtml?topic=plantprom&group=data&subgroup=plantprom
Plantarium	Plantarium online database		Russian	http://www.plantarium.ru/
Plants for a Future	online plant database		English	http://pfaf.org/
Plants of the World Online	online database of the world's plants	plant	English	http://www.plantsoftheworldonline.org/ https://powo.science.kew.org/
Plasmapper	Plasmid mapping server			http://wishart.biology.ualberta.ca/PlasMapper/
Plazi taxon treatment ID	nonproprietary UUID to uniquely identify taxon treatments		English
Plecoptera Species File	online biological database			https://plecoptera.speciesfile.org
PmiRKB
PoMaMo Database - Potato Maps and More	database harbours to date information on molecular maps of all twelve potato chromosomes	potato genome chromosome		http://www.gabipd.org/projects/Pomamo/
PoSSuM	database of ligand-binding search using multiple-sketches	ligand binding		https://possum.cbrc.jp/PoSSuM
Polbase
PolyASite 2.0	resource of poly(A) sites, constructed from publicly available human, mouse and worm 3′ end sequencing datasets	polyadenylation		https://polyasite.unibas.ch
PolymiRTS
Polymorphic simple sequence repeats database
Polyneoptera Species File	online biological database			http://polyneoptera.speciesfile.org/HomePage/Polyneoptera/HomePage.aspx
PomBase	comprehensive database for the fission yeast Schizosaccharomyces pombe, providing structural and functional annotation, literature curation and access to large-scale data sets	Schizosaccharomyces pombe cell biology genetics	English	https://www.pombase.org/	Creative Commons Attribution 4.0 International
Pomet	Genbank of different varieties of fruit trees and shrubs		Danish
Popgenie
Portal to the Flora of Italy	database		English Italian	http://dryades.units.it/floritaly/index.php
PortalWeb Ecuador	database that provides information of some amphibian and reptiles species of Ecuador	Amphibia Reptilia Ecuador genome	Spanish	https://bioweb.bio/portal/	Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International
PrOtein TerminUS- ProTeus	Signature sequences at the protein N- and C-termini			http://www.proteus.cs.huji.ac.il/
Pristionchus.org	genetic, molecular and genomic toolkit of satellite specie Pristionchus pacificus for studies evolutionary developmental biology	Pristionchus pacificus evolutionary developmental biology		http://www.pristionchus.org
ProGlycProt	Database of experimentally verified glycosites and glycoproteins of the prokaryotes			http://www.proglycprot.org/
ProKinO: Protein Kinase Ontology Browser	online database	protein kinase		http://vulcan.cs.uga.edu/prokino/about/browser
ProOpDB	prokaryotic operon database	genome		http://biocomputo.ibt.unam.mx:8080/OperonPredictor/
ProRepeat	Database of protein repeats			http://prorepeat.bioinformatics.nl/
ProSAS
ProThermDB	ProThermDB is a database for proteins and mutants with data on protein stability			https://www.iitm.ac.in/bioinfo/ProTherm2/
Project Plumage	We are photographing specimens of virtually all 10,000 living bird species in both the human visible and ultraviolet spectrum to better understand avian colour diversity and evolution.	bird color Natural History Museum, London photograph	English
ProtCID
ProtChemSI	database of protein-chemical structural interactions	protein		http://pcidb.russelllab.org
Protegen: Protective Antigens	web-based central database and analysis system that curates, stores, and analyzes protective antigens.	antigen		https://www.violinet.org/protegen/
Protein Antigen Database	Database focuses on understanding the protein antigens found in Streptococcus pneumoniae to work towards a potential novel pneumococcal vaccine to combat illness caused by this disease	protein antigen Streptococcus pneumoniae		https://manpreetatwal5.wixsite.com/antigen-database
Protein Circular Dichroism Data Bank	public repository archives and distributes circular dichroism (CD) and synchrotron radiation (SRCD) spectral data	circular dichroism synchrotron radiation		https://pcddb.cryst.bbk.ac.uk
Protein Clusters	Related protein sequences (clusters)of Reference Sequence proteins encoded by complete genomes			https://www.ncbi.nlm.nih.gov/proteinclusters
Protein Information Resource	database and bioinformatics resource			https://proteininformationresource.org/
Protein Ontology	provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them	protein		http://proconsortium.org	Creative Commons Attribution 4.0 International
Protein Research Foundation	organization in Osaka, Japan			https://www.prf.or.jp
Protein Segment Finder
Protein-RNA interface database				http://pridb.gdcb.iastate.edu/RPISeq/
ProteinNet	a standardized data set for machine learning of protein structure				MIT License	TensorFlow
Proteome Analyst				http://pa.wishartlab.com/pa/pa/
Proteome Inc.	represents GO annotations created in 2001 for NCBI and extracted into UniProtKB-GOA from EntrezGene			http://www.proteome.com/
ProteomeScout	database of proteins and post-translational modifications	protein post-translational protein modification		https://proteomescout.wustl.edu/
Proteomics Identifications Database	biological database			http://www.ebi.ac.uk/pride
Proteopedia	3D encyclopedia of proteins and other molecules		English	http://proteopedia.org/wiki/index.php/Main_Page	Creative Commons Attribution-ShareAlike 3.0 Unported
PseudoBase++	database containing structural, functional and sequence data related to RNA pseudoknots	RNA		https://rnavlab.utep.edu/database
PseudoCAP	Biological database			http://www.pseudomonas.com/pseudocap
Pseudogene	Database of pseudogenes annotations compiled from various sources	pseudogene	English	http://www.pseudogene.org/
Pseudomonas Genome Database	resource for peer-reviewed, continually-updated annotation for the Pseudomonas aeruginosa PAO1 reference strain genome	microbiology Pseudomonas aeruginosa PAO1		http://www.pseudomonas.com
Psocodea Species File	database of Psocodea insects			https://psocodea.speciesfile.org/
PubChem	chemical information database	chemistry	English	http://pubchem.ncbi.nlm.nih.gov	free content
PubMed	online database with abstracts of medical articles, hosted by US National Library of Medicine		English	https://pubmed.ncbi.nlm.nih.gov/ https://pmlegacy.ncbi.nlm.nih.gov
PubMed Central	repository of freely accessible biomedical journal articles		English	http://www.ncbi.nlm.nih.gov/pmc/ https://www.ncbi.nlm.nih.gov/pmc/
PyIgClassify-Clusters of Antibody CDR Loop Conformations	Clusters of conformations of antibody CDRs			http://dunbrack2.fccc.edu/PyIgClassify/default.aspx
R-loopDB	An R-loop is a three-stranded nucleic acid structure, formed during transcription, which comprises of nascent RNA hybridized with the DNA template, leaving the non-template DNA single-stranded.	genome		http://rloop.bii.a-star.edu.sg/
RAP-DB	comprehensive analysis of the genome structure and function of rice on the basis of the annotation	rice genome		https://rapdb.dna.affrc.go.jp/
RBP-Var--A platform for exploring functional variants involved in post-transcriptional regulation mediated by RNA-binding proteins	Human genome variants which could change the RNA structure and affect RNA-protein interactions			https://www.oxfordjournals.org/nar/database/summary/1836
RCSB protein data bank	US data center for the global PDB archive	biology medicine		https://www.rcsb.org
REBASE	database for DNA restriction enzymes			http://rebase.neb.com/rebase/rebase.html
REDIportal	atlas of A-to-I RNA editing events in human and other organisms	RNA modification		http://srv00.recas.ba.infn.it/atlas/index.html
REDfly	regulatory element database for Drosophila and other insects			http://redfly.ccr.buffalo.edu/
REFOLDdb	database of protein refolding methods			https://pford.info/refolddb/?lang=EN
REPAIRtoire	Database of resources for systems biology of DNA damage and repair			http://repairtoire.genesilico.pl/
RESP ESP charge DDataBase	database of RESP and ESP charges and force field libraries for small molecules and molecular fragments	force field		https://upjv.q4md-forcefieldtools.org/REDDB
RIDOM	evolving electronic resource designed to provide microorganism differentiation services for medical identification needs	microbial genome		http://www.ridom.de
RIKEN integrated database of mammals	integrated database of mammalian genomes, phenotypes, strains and cell lines	mammal		http://metadb.riken.jp/metadb/download/SciNetS_ria254i	Creative Commons Attribution-ShareAlike 4.0 International
RMBase	comprehensive database to integrate epitranscriptome sequencing data for exploring post-transcriptionally modifications of RNAs	RNA		https://rna.sysu.edu.cn/rmbase/
RNA Bricks	database of RNA 3D structure motifs and their contacts	RNA		http://iimcb.genesilico.pl/rnabricks
RNA CoSSMos
RNA STRAND	RNA secondary structure and statistical analysis database	RNA		http://www.rnasoft.ca/sstrand/
RNA helicase database	RNA helicase database stores data about RNA helicases			http://www.rnahelicase.org/	proprietary license
RNA modification database	compilation of databases, web portals and servers used for RNA modification.	RNA		http://rna-mdb.cas.albany.edu/RNAmods
RNA-binding protein database	database of RNA-binding proteins			http://rbpdb.ccbr.utoronto.ca/
RNACentral	database about non-coding RNA sequences	RNA		https://rnacentral.org/	Creative Commons CC0 License
RNALocate	resource for efficient manipulation, browsing and analysis of RNA subcellular localization	RNA		http://www.rna-society.org/rnalocate
RNAiDB	database provides access to results from RNAi interference studies in C. elegans , including images, movies, phenotypes, and graphical maps	Caenorhabditis elegans RNA interference		http://www.rnai.org/
ROCCET				http://www.metaboanalyst.ca/
RPFdb	resource for hosting, analyzing and visualizing ribosome profiling (Ribo-seq) data	ribosome		http://sysbio.gzzoc.com/rpfdb/index.html
RPG - Ribosomal Protein Gene database	Ribosomal protein gene database			http://ribosome.med.miyazaki-u.ac.jp/
Rat genome database	Database of rat genomics	laboratory rat	English	http://rgd.mcw.edu
Reactome	database of biological pathways	Homo sapiens insulin biological pathway protein	English	https://reactome.org http://www.reactome.org/	Creative Commons CC0 License
Recode	biological database
Red List of South African Plants	list of national conservation statuses of South Africa's indigenous plants			http://redlist.sanbi.org/
RefDB	NMR spectroscopy database of carefully corrected or re-referenced chemical shifts			http://refdb.wishartlab.com/
RefSeq	database containing reference sequences of genes, proteins and transcripts	nucleotide genomics protein transcription		https://www.ncbi.nlm.nih.gov/RefSeq
RegPrecise	database for capturing, visualization and analysis of transcription factor regulons that were reconstructed by the comparative genomic approach in a wide variety of prokaryotic genomes			https://regprecise.lbl.gov/
RegTransBase	biological database
RegulonDB	primary database on transcriptional regulation in Escherichia coli K-12			http://regulondb.ccg.unam.mx/
RepTar	database of genome predictions of human and mouse miRNAs and cellular targets of human and mouse viral miRNAs	microRNA		http://bioinformatics.ekmd.huji.ac.il/reptar
RepeatsDB	database of tandem repeat protein structures	tandem repeat		https://repeatsdb.org
Reptile Database	database that provides information of all living reptile species	Reptilia worldwide taxonomy name literature ecology conduct	English	http://www.reptile-database.org
Reptiles of India	Reptiles of India online database		English	http://www.indianreptiles.org/
Reptilian Transcriptomes	database that provides annotations of the major reptilian lineages	genome transcriptome Reptilia	English	https://www.reptilian-transcriptomes.org/reptilian-transcriptomes/Database_v2.0.html
Resolution by Proxy				http://www.resprox.ca/
Resource of Asian Primary Immunodeficiency Diseases	online biological database	immunodeficiency disease		http://web16.kazusa.or.jp/rapid/
RetrOryza
RettBASE	Rett Syndrome Variation Database			http://mecp2.chw.edu.au/
Rfam	database containing information about non-coding RNA (ncRNA) families and other structured RNA elements	RNA		http://rfam.xfam.org/	Creative Commons CC0 License
Rhea	database of chemical reactions		English	https://www.rhea-db.org/
Ribosomal Mutation Database	provides lists of mutated positions in ribosomal RNA	ribosome mutation		https://crw-site.chemistry.gatech.edu/SAE/2B/RNA_Mutations_Triman_Database.pdf
RiceFREND	gene coexpression database in rice	rice gene		https://ricefrend.dna.affrc.go.jp/
RsiteDB	database that details interactions of unpaired RNA nucleotide bases and binding sites	binding site		http://bioinfo3d.cs.tau.ac.il/RsiteDB
RxNorm	normalized dictionary for drugs and drug formulations from the National Library of Medicine, part of UMLS		English	http://www.nlm.nih.gov/research/umls/rxnorm/
S/MARt				http://smartdb.bioinf.med.uni-goettingen.de/	proprietary license
S/MARt DB	database collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix.	gene		http://smartdb.bioinf.med.uni-goettingen.de/
SABIO-Reaction Kinetics Database	online database of biochemical reactions	biochemical		http://sabiork.h-its.org/ http://sabio.h-its.org/
SASBDB	Small angle scattering Biological Data Bank	small-angle scattering		https://www.sasbdb.org/
SBASE	SBASE (http://www.icgeb.trieste.it/sbase) is an on-line collection of protein domain sequences and related computational tools designed to facilitate detection of domain homologies based on simple database search			http://www.icgeb.org/sbase/
SCOPe	classification of protein domains by structure and library of sequences	protein		http://scop.berkeley.edu
SCPD The Promoter Database of Saccharomyces cerevisiae	promoter database of saccharomyces cerevisiae	Saccharomyces cerevisiae transcription factor gene		http://rulai.cshl.edu/SCPD/
SCRIPDB	database of chemical structures associated to patents	chemical structure		http://dcv.uhnres.utoronto.ca/SCRIPDB/search
SCoV2-MD	MD data of SARS-CoV-2 related proteins	SARS-CoV-2 protein COVID-19		http://www.scov2-md.org
SCovid	single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues	COVID-19 tissue human		http://bio-annotation.cn/scovid/#/
SDAP-Structural Database of Allergenic Proteins	SDAP (Structural Database of Allergenic Proteins) is a Web server that provides rapid, cross-referenced assess to the sequences, structures, and IgE epitopes of allergenic proteins.			https://fermi.utmb.edu/SDAP/
SE European Bird Migration Network	research network studying bird migration			https://www.seen-net.eu/
SEINet				http://swbiodiversity.org/seinet/index.php
SELEX_DB	a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data	DNA oligomer		http://wwwmgs.bionet.nsc.ru/mgs/systems/selex/
SGD	provides biological information for the yeast Saccharomyces cerevisiae and search and analysis tools to explore data	Saccharomyces cerevisiae	English	http://www.yeastgenome.org
SHIFTCOR
SIB-My Hits	Hits is a free database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them			https://myhits.sib.swiss/
SIBiLS	Swiss Institute of Bioinformatics Literature Services			https://sibils.text-analytics.ch/
SIFTS	resource for residue-level mapping between UniProt and PDB entries	protein		https://www.ebi.ac.uk/pdbe/docs/sifts
SILVA ribosomal RNA database	Databases of ribosomal RNAs	ribosomal RNA		http://www.arb-silva.de/
SIMAP	BOINC based volunteer computing project			https://cube.univie.ac.at/resources/simap http://mips.gsf.de/simap/
SINEBase: a database and tools for SINE analysis	A database of short interspersed elements (SINEs)	genome		https://sines.eimb.ru/
SMoS.2	database of information on structural motifs of protein domain superfamilies aligned in PASS2	protein structure		http://caps.ncbs.res.in/SMoS2
SNAPPI	Structures, iNterfaces and Alignments For Protein-Protein Interactions	protein-protein interaction		http://www.compbio.dundee.ac.uk/SNAPPI/
SNPedia	wiki about DNA variations	DNA		https://www.snpedia.com/
SNPeffect Phenotyping human mutations.	Uses computational tools to analyse the effect of coding, non-synonymous SNPs on 3 categories of functional and physico-chemical properties of the affected proteins.	disease		https://snpeffect.switchlab.org/
SSToSS	database which provides sequence-structural templates of single member protein domain superfamilies	protein domain		http://caps.ncbs.res.in/SSTOSS/index.htm
STIFDB Stress Responsive Transcription Factor Database	is a database of comprehensive collection of biotic and abiotic stress responsive genes in Arabidopsis thaliana and Oryza sativa L. with options to identify probable Transcription Factor Binding Sites in their promoters.	Arabidopsis thaliana Oryza sativa transcription factor		http://caps.ncbs.res.in/stifdb2/
STINGreport	service for extracting information about an individual amino acid of a protein	amino acid		http://sms.cbi.cnptia.embrapa.br/SMS/STINGm/SMSReport/
STITCH	Database of chemical and biological interactions			http://stitch.embl.de/	proprietary license
SUBA SUBCELLULAR LOCALISATION DATABASE ARABIDOPSIS PROTEIN	The Arabidopsis Subcellular Database (SUBA, http://suba.plantenergy.uwa.edu.au) is maintained by the ARC Centre of Excellence in Plant Energy Biology at The University of Western Australia			https://suba.plantenergy.uwa.edu.au/
SUPFAM-Evolutionary relationships between structure and sequence families	SUPFAM [1-3] is a database of potential superfamily relationships derived from identifying distant evolutionary relationships between protein sequence families.			http://supfam.mbu.iisc.ernet.in/
SWISS-MODEL Repository	collection of 3D protein models generated by the SWISS-MODEL homology-modelling	protein structure		https://swissmodel.expasy.org/repository
ScanProsite-ProRule	The ProRule database is a new section of PROSITE, which contains additional information about profiles			https://www.expasy.org/resources/scanprosite
Scarabs: World Scarabaeidae Database	biological database			https://www.datascaraebaeoidea.net/
ScerTF	a curated database that incorporates position specific matrices derived from a variety of experimental and computational methods	Saccharomyces transcription factor		http://stormo.wustl.edu/ScerTF/
Schizophrenia Gene Resource 2	rovides a comprehensive online resource for schizophrenia studies. Built in 2009, SZGR curates data from genetics studies, transcriptome studies, and epigenetics studies.	schizophrenia disease		https://bioinfo.uth.edu/SZGR/
Scientific Database of China Plant Species	online database of plants in China	plant	Simplified Chinese	http://db.kib.ac.cn/
Sea Slug Forum
SeaLifeBase	global online database of information about marine life		English	https://www.sealifebase.org/home/index.php
Search System of Japanese Red Data	biological database	Japanese Red List fauna flora		http://jpnrdb.com
Search Tool for the Retrieval of Interacting Genes/Proteins	biological database			http://www.string-db.org/	Creative Commons Attribution 4.0 International
SecReT4	comprehensive collection of information of type IV secretion systems (T4SSs) in bacteria	type IV secretion systems		https://bioinfo-mml.sjtu.edu.cn/SecReT4/index.php
Sequence Read Archive	an archive repository for storing and or including sequence read data's on journals that required for some journals such as opan accsess journals			https://www.ebi.ac.uk/ena/browser/home
Serum Metabolome Database	web database about small molecule metabolites found in human serum
ShiBASE	provides a workbench for the comparative genomics studies of Shigella	Shigella comparative genomics		http://www.mgc.ac.cn/ShiBASE
ShiftX				http://shiftx.wishartlab.com/
SidechainNet	a protein structure prediction dataset				3-clause BSD License	Python Pickle serialized data (v4)
Signaling Gateway	web Portal
SilkSatDb	online relational database of silkworm microsatellites	silkworm microsatellite		http://www.cdfd.org.in/SILKSAT/index.php
Simple Modular Architecture Research Tool	biological database			http://smart.embl.de/
Sistema de Informação sobre a Biodiversidade Brasileira - SiBBr	biological research repository			https://www.sibbr.gov.br/
Slovene Vernacular Names of Invertebrates	database of vernacular names of animals			http://anthrenus.pms-lj.si/imenik/imenik.php
Small Molecule Pathway Database	online database of metabolic pathways			http://www.smpdb.ca/
SmedGD	web resource hosting Schmidtea mediterranea genome sets and data	Schmidtea mediterranea genome		https://planosphere.stowers.org/smedgd
SmiNet	swedish database			https://www.folkhalsomyndigheten.se/sminet/
Snakes of Bangladesh	database of snakes species of Bangladesh	snake Bangladesh poison protein	English	http://www.snakebd.com/index.php
Snptstr
Sol Genomics Network	The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.
SomamiR	resource of data of somatic and germline mutations on miRNA function in cancer	somatic mutation germline mutation cancer microRNA		https://compbio.uthsc.edu/SomamiR
South African Natural Compounds Database	chemical database			https://sancdb.rubi.ru.ac.za/
Soybase	database about soybean genetics			https://soybase.org/
Species Nomenclature Database	the official checklist of species occurring in Norway			http://www2.artsdatabanken.no/artsnavn/Contentpages/Hjem.aspx
Species Profile and Threats Database	Australian online data base for threatened taxa and communities		English	http://www.environment.gov.au/cgi-bin/sprat/public/sprat.pl
Species at risk public registry				https://faune-especes.canada.ca/registre-especes-peril/sar/index/default_f.cfm https://wildlife-species.canada.ca/species-risk-registry/sar/index/default_e.cfm
Species+			English	http://www.speciesplus.net/
Specify Collections Consortium	database that provides information of amphibians and reptiles from North America	worldwide Amphibia Reptilia		https://www.csm.auburn.edu/specifyweb/herpvouchers/
Spike	computational biology database
SpliceAid database	a database of human splicing factors expression data and RNA target motifs.	RNA human		http://193.206.120.249/splicing_tissue.html
SpliceInfo
Spliceosome Database	Spliceosome Database is a collection of tools for studying spliceosomes	spliceosome		http://spliceosomedb.ucsc.edu/
Stanford Tissue Microarray Database	database of tissue microarray-based papers that contain a browsable GeneExplorer-based scoring cluster and image	database DNA microarray molecular biology		https://tma.im/cgi-bin/home.pl
StarBase	openly licensed platform to decode the cellular interaction networks among of RNA binding proteins (RBPs) and various RNAs	RNA-binding proteins interactome		https://starbase.sysu.edu.cn
Start2Fold	database of hydrogen/deuterium exchange data on protein folding and stability	protein folding protein stability		https://www.bio2byte.be/start2fold
Stem cell lineage database
Strbase
Structural Classification Of Proteins	database that hierarchical categories protein structures based on structural and evolutionary relationships	protein structure		http://scop.mrc-lmb.cam.ac.uk
Structural variation in chromosomes: inversions, translocations, insertions and deletions	dbVar is NCBI's database of human genomic Structural Variation — large variants bp including insertions, deletions, duplications, inversions, mobile elements, translocations, and complex variants	disease gene		https://www.ncbi.nlm.nih.gov/dbvar
Structure Superposition Database	interface developed as an extension to UCSF Chimera provides structural superposition data	molecular structure		http://www.cgl.ucsf.edu/chimera
Structure atlas of human genome
SubtiWiki	database for the Gram-positive model bacterium Bacillus subtilis	Bacillus subtilis		http://subtiwiki.uni-goettingen.de
SuperCYP	database of CYP metabolism			http://bioinformatics.charite.de/supercyp/
SuperFly	database for the comparative analysis of segmentation gene expression and regulation in dipteran species	gene expression regulation of gene expression Diptera		http://superfly.crg.eu
SuperPose				http://wishart.biology.ualberta.ca/SuperPose/
SuperSweet	natural and artificial sweetening agents	sweetener		https://bioinformatics.charite.de/sweet
Superfamily	protein and genome structural and functional annotation database	protein structure		http://supfam.org/SUPERFAMILY
SureChEMBL	database for chemical compounds in patents, operated by the European Bioinformatics Institute (EBI)			https://www.surechembl.org	Creative Commons Attribution-ShareAlike 3.0 Unported
SwissLipids	knowledgebase for lipid biology	lipid	English	http://www.swisslipids.org/	Creative Commons Attribution 4.0 International
SwissRegulon Database	is a database containing genome-wide annotations of regulatory sites in the intergenic regions of genomes	genome		https://swissregulon.unibas.ch
SwissSidechain	structural and molecular mechanics database of hundreds of non-natural amino-acid sidechains that can be used to study in silico their insertion into natural peptides or proteins.			https://www.swisssidechain.ch/
SynGO	biological database			http://geneontology.org/page/syngo-synapse-biology
Synthetic gene database	database of artificially engineered genes	gene		http://www.umbc.edu/codon/sgdb/index.php
Syscilia	A systems biology approach to dissect cilia function and its disruption in human genetic disease			http://syscilia.org/
Systematic Catalog of Culicidae	online database of mosquitoes		English	http://www.mosquitocatalog.org/default.aspx
Systematic Protein Investigative Research Environment
T-Psi-C	database of tRNA sequences, molecules information, modifications, secondary structure, cell localization and organism.	transfer RNA		https://tpsic.igcz.poznan.pl/info/start
T-cell COVID-19 Atlas	SARS-CoV-2 mutations with affect in CD8 and CD4 T-cell epitopes data	COVID-19		https://t-cov.hse.ru/
TAXREF	national taxonomic reference of France		French	https://taxref.mnhn.fr
TBDB	online database providing integrated access to genome sequence, expression data and literature curation for TB	tuberculosis		https://www.tbdb.org
TDR Targets	integrates genomic data from human pathogens and model organisms along with information on bioactive compounds and their annotated activities	pathogen tropical disease		https://tdrtargets.org
TGD - Tetrahymena Genome Database	database of information about the genes, proteins, and genomes of Tetrahymena thermophila,	Tetrahymena thermophila gene protein genome		http://ciliate.org/index.php/home/welcome
THGS - Transmembrane Helices in Genome Sequences	Predicted transmembrane proteins			http://pranag.physics.iisc.ernet.in/thgs/
TIARA	genomics database
TIGR plant repeat database
TIGR plant transcript assembly database
TIGRFAMs	database of protein families			http://www.jcvi.org/cgi-bin/tigrfams/index.cgi
TISdb	provides tools to search for translation initiation site (TIS) positions and the associated open reading frames (ORFs)	open reading frame		http://tisdb.human.cornell.edu
TOPPR	The Online Protein Processing Resource			https://iomics.ugent.be/toppr/
TOPSAN	collaborative environment for annotating, analyzing and disseminating data on protein structures	protein structure		https://topsan.org
TORCH Data Portal	online database of the Texas Oklahoma Regional Consortium of Herbaria (TORCH)	herbarium specimen botanical specimen	English	https://portal.torcherbaria.org/portal/index.php
TOXMAP	GIS of the U.S. National Library of Medicine
TRACTOR db	a relational database that contains computational predictions of new members of 74 regulons in eight gamma-proteobacterial genomes.	genome Gammaproteobacteria		http://www.tractor.lncc.br/
TRANSFAC	database of eukaryotic transcription factors			http://www.gene-regulation.com/pub/databases.html
TSTMP	human transmembrane protein database for structural genomics projects	transmembrane protein		http://tstmp.enzim.ttk.mta.hu
TTSMI database	Triplex target DNA site mapping and integration database	DNA genome		http://ttsmi.bii.a-star.edu.sg/
Tandem Repeats Database	Tandem repeats database is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis	DNA		https://tandem.bu.edu/cgi-bin/trdb/trdb.exe
TargetScan	search for predicted microRNA targets in mammals	human		https://www.targetscan.org/vert_80/
TassDB	TAndem Splice Site DataBase stores extensive data about alternative splice events at GYNGYN donors and NAGNAG acceptors	gene		http://www.tassdb.info/
TassDB2	data about GY(N)0-10GYN donors and NAG(N)0-10AG acceptors in human and mouse	human mouse		http://tassdb2.leibniz-fli.de/
Taxonomy database of the U.S. National Center for Biotechnology Information	curated classification and nomenclature for all of the organisms in the public sequence databases		English Latin	https://www.ncbi.nlm.nih.gov/taxonomy
TcoF-DB	is a database that facilitates the exploration of proteins involved in the regulation of transcription in humans	DNA transcription		https://www.cbrc.kaust.edu.sa/tcof/
Tela Botanica	French botanical community		French	https://www.tela-botanica.org/
Telomerase database	Sequences and structures of the RNA and protein subunits of telomerase, mutations of telomerase components			http://telomerase.asu.edu/
Tennessee-Kentucky Plant Atlas	website and online database about the vascular plants of Tennessee and Kentucky	flora plant phytogeography wild plant	English	https://tennessee-kentucky.plantatlas.usf.edu/
ThYme	database of enzymes
The ABCD (AntiBodies Chemically Defined) Database	AntiBodies Chemically Defined database			https://web.expasy.org/abcd/
The Antibody Registry	The Antibody Registry gives researchers a way to universally identify antibodies used in their research	antibody		https://antibodyregistry.org/
The Arabidopsis Information Resource	genetic and molecular biology database for Arabidopsis thaliana	Arabidopsis thaliana biology		https://www.arabidopsis.org
The Autism Chromosome Rearrangement Database	A curated database of chromosomal breakpoints and other genomic features related to autism.	autism disease		http://projects.tcag.ca/autism/
The Centre for Arab Genomic Studies.	Established in 2003 with the aim of reducing the burden of genetic disorders in the Arab World. Since then, CAGS has become a major global reference point for genetic information in Arabs.	disease		https://cags.org.ae/en
The Drug Gene Interaction Database	DIANA-TarBase is a reference database devoted to the indexing of experimentally supported microRNA (miRNA) targets.	gene disease		https://www.dgidb.org/
The European rRNA database	compilation of nearly complete SSU (small subunit) and LSU (large subunit) ribosomal RNA sequences	ribosomal RNA		http://bioinformatics.psb.ugent.be/webtools/rRNA
The Feather Atlas flight feathers of Nort American Birds	THE FEATHER ATLAS is an image database dedicated to the identification and study of the flight feathers of North American birds.The feathers illustrated are from the curated collection of the National Fish and Wildlife Forensics Laboratory.	bird feather wildlife color	English	https://www.fws.gov/lab/featheratlas/
The Floral Reflectance Database FReD	Floral Reflectance Database	flower reflectance	English	http://www.reflectance.co.uk/index.php
The Garden.org Plants Database	online database of plants worldwide, which is collaboratively developed by over 4,000 Garden.org members from around the globe	ornamental plant	English	https://garden.org/plants/
The Gen Curation Coalition	database which provides information pertaining to the validity of gene-disease relationships, with a current focus on Mendelian diseases	Gene Disease Database		https://search.thegencc.org/
The Global Lepidoptera Names Index	online resource for names of butterflies and moths		English	https://www.nhm.ac.uk/our-science/data/lepindex/search/
The Health Improvement Network
The IUCN Red List of Threatened Species 2017.3
The Immune Epitope Database	database provides a catalog of experimentally characterized B and T cell epitopes, as well as data on MHC binding and MHC ligand elution experiments.	T Cell Epitopes epitope B-cell immunology database		http://www.iedb.org/
The Japanese Genotype-phenotype Archive				http://trace.ddbj.nig.ac.jp/jga/index_e.html	proprietary license
The Lafora Progressive Myoclonus Epilepsy Mutation and Polymorphism Database	A curated database of mutations and polymorphisms associated with Lafora Progressive Myoclonus Epilepsy.	epilepsy polymorphism disease		http://projects.tcag.ca/lafora/
The Lipase Engineering Database	The Lipase Engineering Database (http://www.led.uni-stuttgart.de) integrates information on sequence, structure, and function of lipases, esterases, and related proteins			http://www.led.uni-stuttgart.de/
The Living Color Database	color database	color in nature biological pigment		https://color.bio/database
The Monarch Initiative	biological database and online resource for integrating genotype and phenotype data			https://monarchinitiative.org
The Plant List	database of scientific plant names		English	http://www.theplantlist.org
The Proteolysis Map	integrated web resource focused on proteases			http://sonny.burnham.org/proteases/
The Snake venom database (SVDB)	database with all information on venomous snakes	venom nucleotide protein snake worldwide toxin gene literature	English	https://www.snakevenomdb.org/
The Zoological Record	index of zoological literature	zoology taxonomy bibliography	English	http://thomsonreuters.com/products_services/science/science_products/a-z/zoological_record/
The chaperonin database- cpnDB	Chaperonins are a diverse family of molecular chaperones present in the plastids, mitochondria, and cytoplasm of eukaryotes, and in bacteria and archaea			https://www.cpndb.ca/
The families of flowering plants by Watson & Dallwitz			English	http://delta-intkey.com/angio
Threatened Species Link				https://www.threatenedspecieslink.tas.gov.au/Pages/default.aspx
TiProD: Tissue specific promoter Database	is a database of human promoter sequences for which some functional features are known.	tissue gene		http://tiprod.bioinf.med.uni-goettingen.de/
Titan	Titan online database for Cerambycidae (longhorn beetles)		French	http://titan.gbif.fr/index.html
TopDB-Topology Data Bank of Transmembrane Proteins Topology, Structure and Prediction	Topology Data Bank of transmembrane proteins			http://topdb.enzim.hu/
TopFIND	knowledgebase of protein termini			http://clipserve.clip.ubc.ca/topfind
Toxin and Toxin-Target Database	online database of compounds toxic to human			http://www.t3db.ca/
Toxin-antitoxin database					proprietary license
ToxoDB	provides Toxoplasma gondii data and data mining tools useful for the analysis of sequence	Toxoplasma gondii genome database infectious disease parasite fungus		https://toxodb.org/toxo/app
Transient receptor potential channel-interacting protein database	biological database
TransmiR	database for transcription factor (TF)-microRNA (miRNA) regulations, through which one can find regulatory relations between TFs and miRNAs			http://www.cuilab.cn/transmir
Transpogene	database of Transposed elements (TEs) which are located within protein-coding genes of 7 organisms: human, mouse, chicken, zebrafish, fruilt fly, nematode and sea squirt			http://transpogene.tau.ac.il/
TransportDB	relational database describing the predicted cytoplasmic membrane transport protein complement for organisms whose complete genome sequences are available	genomics plasma membrane		http://www.membranetransport.org/transportDB2/index.html
Transporter Classification database	classification of membrane proteins including ion channels	Membrane transport protein	English	http://www.tcdb.org/	Creative Commons Attribution-ShareAlike 3.0 Unported GNU Free Documentation License Creative Commons Attribution-ShareAlike GNU General Public License
Transterm	generic sequence research database
TreatmentBank	taxonomic database	taxonomic treatment		https://plazi.org/treatmentbank/
Tree of Life Web Project	provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history	history of life biodiversity	English	http://tolweb.org/tree/phylogeny.html
TreeBASE	community resource that stores phylogenetic trees and the data matrices used to generate them from published research papers	biology phylogenetic tree		http://treebase.org
TreeFam	database of phylogenetic trees of animal genes that provides orthology/paralogy predictions as well the evolutionary history of genes.	phylogenetic tree		http://www.treefam.org
TriTrypDB	functional genomic data for trypanosomatid pathogens	Trypanosomatida kinetoplastea pathogen		http://www.TriTrypDB.org
Tropicos	database on tropical plants, mainly the ecozone Neotropica		English	https://www.tropicos.org
Type 2 Diabetes Knowledge Portal	The T2D Knowledge Portal enables browsing, searching, and analysis of human genetic information linked to type 2 diabetes and related traits, while protecting the integrity and confidentiality of the underlying data.	diabetes disease		https://t2d.hugeamp.org/
U12 intron database	is the web interface to the U12-type intron database hosted at the Genome Bioinformatics Laboratory	genome		http://genome.crg.es/cgi-bin/u12db/u12db.cgi	GNU General Public License
UCNEbase	A database provides information on the evolution and genomic organization of ultra-conserved non-coding elements in multiple vertebrate species.	genomics evolution Vertebrata		https://ccg.epfl.ch/UCNEbase/
UCbase				http://ucbase.unimore.it/
UK Biobank	Longterm biobank study of 500,000 people			https://www.ukbiobank.ac.uk/
UM-BBD Reaction	Database on microbial biocatalytic reactions and biodegradation pathways		English	http://umbbd.ethz.ch/	proprietary license
UTRdb
UTRome	3'UTR database for C. elegans.			http://tomato.biodesign.asu.edu/cgi-bin/UTRome/utrome.cgi
Ubiquitin and ubiquitin-like conjugation database-UUCD	Ubiquitin and ubiquitin-like conjugation database			http://uucd.biocuckoo.org/
UgMicroSatdb
UniCarbKB	online information storage and search platform for glycomics and glycobiology research	glycan		http://www.unicarbkb.org
UniChem	database of chemical entities			https://www.ebi.ac.uk/unichem/	Creative Commons Attribution
UniGene				http://www.ncbi.nlm.nih.gov/unigene
UniPROBE
UniParc	The UniProt archive (UniParc), part of the UniProt databases, is an archival protein sequence collection from all major publicly accessible resources			https://www.uniprot.org/uniparc/
UniProt	database of protein sequence and functional information	biology Homo sapiens house mouse growth hormone releasing hormone vasoactive intestinal peptide Calcitonin ghrelin Tuberin neurotensin Urotensin 2	English	https://www.uniprot.org/ http://www.uniprot.org/	Creative Commons Attribution-NoDerivs 3.0 Unported Creative Commons Attribution 4.0 International
UniRef 2022_01 results	The UniProt Reference Clusters are three separate datasets that compress sequence space at different resolutions			https://www.uniprot.org/uniref/
Uniclust	Clustered protein sequences and multiple sequence alignments			https://uniclust.mmseqs.com/
Unisave.	The UniProtKB Sequence/Annotation Version database (UniSave) is a comprehensive archive of UniProtKB/Swiss-Prot a nd UniProtKB/TrEMBL entry versions			http://www.ebi.ac.uk/uniprot/unisave/app/#/
United States Department of Agriculture Plants Database	database of plants found in the USA		English	http://plants.usda.gov/about_plants.html
Univec	biological database	nucleic acids gene		https://www.ncbi.nlm.nih.gov/tools/vecscreen/univec/
Universal Biological Indexer and Organizer			English	http://www.ubio.org/
Universal Virus Database
VBRC	provides tools analitics, data, genomic sequences and gene annotation of different family viruses	Poxviridae African swine fever virus virus		https://4virology.net
VDJdb	The primary goal of VDJdb is to facilitate access to existing information on T-cell receptor antigen specificities, i.e. the ability to recognize certain epitopes in certain MHC contexts			https://vdjdb.cdr3.net/
VFDB	integrated and comprehensive online resource for curating information about virulence factors of bacterial pathogens	virulence factor		http://www.mgc.ac.cn/VFs/main.htm
VIOLIN	vaccine database			http://www.violinet.org/
VIPERdb	database for icosahedral virus capsid structures.	virus viral capsid protein structure		https://viperdb.scripps.edu/
VIRsiRNAdb	database of viral siRNA/shRNA targeting diverse genes of human viruses	small interfering RNA Small hairpin RNA		http://crdd.osdd.net/servers/virsirnadb
VISTA	software tools for genome analysis and genomic sequence comparisons
VISTA Enhancer Browser	his database currently contains over 250 experimentally tested DNA fragments, of which more than 100 have been validated as tissue-specific enhancers			http://enhancer.lbl.gov/
Vaccine Adverse Event Reporting System	system managed by the CDC and FDA that measures harms from vaccines to ascertain whether the risk-benefit ratio is high enough	vaccine safety vaccine adverse event		https://vaers.hhs.gov/ https://vaers.hhs.gov/indexSpanish.html
VarEPS	data from SARS-CoV-2 variants, known and theoretical, versus therapies	SARS-CoV-2 COVID-19		https://nmdc.cn/ncovn/
VarySysDB	This is a system to search, display, and download our research results on human polymorphism based on publicly available data	disease gene		http://h-invitational.jp/varygene/
VectorBase	repository of computing resources and genomic datasets of human pathogens, vectors, and invertebrate hosts	vector pathogen		http://www.vectorbase.org
VectorDB	database of sequence information for common vectors used in molecular biology	molecular biology		http://genome-www.stanford.edu/vectordb/
VertNet	publicly accessible database of vertebrate biodiversity data from natural history collections around the world			http://vertnet.org/
Vertebrate and Genome Annotation Project	Biological database
VetBact	database			http://www.vetbact.org/vetbact/
ViRBase	resource for browsing and visualization of virus-host ncRNA-associated interactions and interaction networks in viral infection	non-coding RNA viral infectious disease		http://www.rna-society.org/virbase
VicFlora	Flora of Victoria, Australia online database		English	https://vicflora.rbg.vic.gov.au/
Vir-Mir db: prediction of viral microRNA candidate hairpins	database which contains predicted viral miRNA candidate hairpins	microRNA three prime untranslated region		http://alk.ibms.sinica.edu.tw/
Viral Bioinformatics Resource Center	online resource providing access to a database of curated viral genomes and a variety of tools for bioinformatic genome analysis	viral genome		http://www.biovirus.org
ViralZone	repository that provides information viruses, virion structure, replication cycle and host–virus interactions	virus	English	http://viralzone.expasy.org/	Creative Commons Attribution 4.0 International
Virtual Guide to the Flora of Mongolia				https://floragreif.uni-greifswald.de/
ViruSurf	novel eevere acute respiratory syndrome coronavirus 2 sequences database	virus disease genetics		http://cerilab.deib.polimi.it/virusurf/
Vlinderstichting vlinders	butterfly database from the Netherlands	Lepidoptera	Dutch	https://www.vlinderstichting.nl/vlinders	Creative Commons Attribution-ShareAlike 3.0 Unported
Voltage-gated potassium channel database	comprehensive sequence database of voltage-gated potassium channels	eukaryote bacteria Archaea potassium		http://vkcdb.biology.ualberta.ca/
Volume Area Dihedral Angle Reporter	protein structure validation web server			http://vadar.wishartlab.com/
WALTZ-DB	open-access database of amyloid fiber-forming hexapeptide sequences	hexapeptide amyloid		http://waltzdb.switchlab.org
WDCM	networking microbial resource to provides information of various types of microbes	microorganism		https://www.wdcm.org
WDDD	collection of information about cell division dynamics in early Caenorhabditis elegans embryos	Caenorhabditis elegans embryo		http://so.qbic.riken.jp/wddd/cdd/index.html
WDQS Query Helper	part of Wikidata SPARQL query service			https://open.fda.gov/
WERAM	comprehensive eukaryotic writers, erasers and readers protein of histone acetylation and methylation system database for 148 eukaryotic species	DNA eukaryote		http://weram.biocuckoo.org/
WHO INN Lists	Publications of the World Health Organization about International Nonproprietary Names for Pharmaceutical Substances (INN)			https://www.who.int/medicines/publications/druginformation/innlists/en/
WebGeSTer	WebGeSTer database is the largest compilation of intrinsic terminators of transcription.	genome		http://pallab.serc.iisc.ernet.in/gester/
Weeds in Ontario	database		English French	http://www.omafra.gov.on.ca/english/crops/insects/weeds.html http://www.omafra.gov.on.ca/french/crops/insects/weeds.html
WholeCellKB	databases specifically designed to enable whole-cell models. Currently, WholeCellKB contains a database of Mycoplasma genitalium, a Gram-positive bacterium and common human pathogen	cell organism		https://www.wholecellkb.org/
Wiki Aves	brazilian citizen science project	birdwatching	Portuguese	https://www.wikiaves.com.br/
WikiGenomes	Web application interface for viewing and editing microbial genetic data in Wikidata	gene		http://www.wikigenomes.org
WikiPathways	database of biological pathways	biological pathway metabolite gene product biological network Gibberella zeae brown rat house mouse Escherichia coli Homo sapiens 6-HITC sn-glycerol 3-phosphate(2-) IP3 N-acetyl-L-aspartate cyclopamine nocodazole norcodeine (stereochemistry defined) 4'-hydroxydiclofenac tamoxifen N-beta-D-glucosiduronic acid m-hydroxybenzoylecgonine o-tolualdehyde (32RS)-rapamycin 1,2-dichloroethene Prostacyclin (not favourable) citric acid 5-(3'-carboxy-3'-oxopropyl) -4,6-dihydroxypicolinate 3-Hydroxylidocaine 4-(2-amino-5-hydroxyphenyl) -2,4-dioxobutanoate (S)-sulindac 2-(Diaminomethylideneamino)-2-phosphonoacetate(1-) aflatoxin Q1 5-methyltetrahydrofolate(2-) Pinoline N-acetylglutamate alpha-Hydroxy-N-desmethyltamoxifen 6-Sulphatoxymelatonin coenzyme A 5-hydroxyindoleacetate bleomycin A2 (incomplete stereochemistry) 2-(N-Hydroxy-2,6-dichloroanilino)-5-hydroxybenzeneacetic acid GQ1c Plicamycin FADH2 (2-) 4-Methoxyestrone acetoacetate (S)-(−)-colchicine GT3 CDP-ethanolamine Benzo[a]pyrene-7-sulfate (E)-endoxifen cytochalasin B 12-O-tetradecanoylphorbol-13-acetate deoxyuridine monophosphate indolepyruvate 5-hydroxyindolepyruvate phosphocholine cation GT1a guanosine cyclic 3',5'-phosphate 5-hydroxy-N-formylkynurenine trichotriol 3-(6-methylpyridin-2-yl)-N-phenyl-4-quinolin-4-ylpyrazole-1-carbothioamide pd-168393 aflatoxin M1 silibinin A cyclosporine Benzo[a]pyrene-1,6-dione lysophosphatidic acid docosanoyl-CoA 17beta-estradiol 17-glucosiduronic acid DL-serine hydron cortisol	English	https://www.wikipathways.org/	Creative Commons CC0 License
WikiProject COVID-19	Wikimedia WikiProject dedicated to COVID-19
Wild Herps	database			http://www.wildherps.com
Wildflowers of Palestine			English Hebrew Russian	http://www.wildflowers.co.il
Withdrawn	database of withdrawn and discontinued drugs			http://cheminfo.charite.de/withdrawn	free content
Woody Plants Database	online database of woody plant species, focusing on woody plants used for landscaping in New York and the Northeast	woody plant	English	http://woodyplants.cals.cornell.edu/home
WorfDB	databases of ORFeome predictions from C. elegans	ORFeome		http://worfdb.dfci.harvard.edu/html
World Arachnid Catalog	biological database with information about arachnids			https://wac.nmbe.ch/
World Auchenorrhyncha Database	biological database	Myerslopiidae Palaeontinoidea Pereborioidea Prosboloidea Scytinopteroidea Cicadoidea Hylicelloidea Blattoprosboloidea Dysmorphoptiloidea Ligavenoidea Cicadellidae Melizoderidae Aetalionidae Auchenorrhyncha	English	https://hoppers.speciesfile.org/otus/319/overview	Creative Commons CC0 License
World Flora Online	online flora for plants		English	http://www.worldfloraonline.org/
WormBase RNAi	WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and d			https://wormbase.org/#012-34-5
WormBook	journal	Nematoda Caenorhabditis elegans	English	http://www.wormbook.org
WormQTL	public archive and analysis web portal for natural variation data in Caenorhabditis spp	Caenorhabditis		http://www.wormqtl.org
WormQTLHD	database that quantitatively and systematically links expression Quantitative Trait Loci (eQTL) findings in C. elegans to gene–disease associations in man	Caenorhabditis elegans quantitative trait locus		https://www.wormqtl-hd.org/xqtl_panacea/molgenis.do
XMetDB	Database of CYP reactions			http://www.xmetdb.org/	Creative Commons license
Xenbase	model organism database on Xenopus frogs	Xenopus frog genome		https://www.xenbase.org/entry/
Xeno-canto	citizen science ornithology project	bird citizen science	English	https://www.xeno-canto.org/
Y Chromosome Haplotype Reference Database	open-access biological database	Y chromosome haplotype		https://yhrd.org/
YGOB	online tool for visualising the syntenic context and the comparative genomic visualization of from several yeast genomes	synteny yeast genome		http://ygob.ucd.ie
YM500	database that contains more than 11,000 cancer-related smRNA and 10,000 RNA-seq datasets	smRNA RNA sequencing cancer		http://120.110.158.132:8787/ym500v3
YMDB				http://www.ymdb.ca/
YeTFaSCo	is a database of transcription factors for Saccharomyces cerevisiae	transcription factor Saccharomyces cerevisiae		http://yetfasco.ccbr.utoronto.ca/
Yeast Intron Database	provides information about the location, structure, and function of spliceosomal introns in the nuclear genome of S. cerevisiae	intron Saccharomyces cerevisiae genome eukaryote		https://compbio.soe.ucsc.edu/yeast_introns.html
Yeast Promoter Atlas	collectes nine kinds of promoters in Saccharomyces cerevisiae to help study transcriptional regulation.	promoter yeast Saccharomyces cerevisiae		http://ypa.ee.ncku.edu.tw
Yeast Resource Center	provides access to scientific experimental data resulting from collaborations and technology development involving the Yeast Resource Center	yeast		https://www.yeastrc.org/pdr/pages/front.jsp;jsessionid=E037F3DF83688D3CDD9CD6C6C5C50064
Yeast deletion project
YeastNet	probabilistic functional gene network for baker's yeast, Saccharomyces cerevisiae	Saccharomyces cerevisiae gene network		http://www.inetbio.org/yeastnet
Yeastract	database			http://www.yeastract.com/
YuBioLab	biological database			http://citgenedb.yubiolab.org/
ZINC15	free database of commercially-available compounds for virtual screening			http://zinc15.docking.org/	proprietary license
ZInC	web-searchable interface of insertional mutants in zebrafish	mutant Danio rerio insertion mutation		https://research.nhgri.nih.gov/zinc
Zebrafish Information Network	biological database of information on Danio rerio	Danio rerio	English	https://zfin.org/
ZooBank	open access website, official ICZN taxonomic registry		English	http://zoobank.org/
Zoraptera Species File	online biological database			https://zoraptera.speciesfile.org/
almena	comprehensive resource of genetic variants in Middle East and North Africa	disease genome		https://clingen.igib.res.in/almena/
antiSMASH	provides a means to access and query precomputed antiSMASH-5.2-detected biosynthetic gene clusters from representative microbial genomes	genome		https://antismash-db.secondarymetabolites.org
caNanoLab	database of biomedical nanotechnology research			https://cananolab.nci.nih.gov/caNanoLab/	free content
ccPDB	database of datasets that provides services of function or structure annotation of proteins based on Protein Data Bank (PDB)	protein structure		http://crdd.osdd.net/raghava/ccpdb
clinical data repository	medical database system designed to provide a realtime summary of a patient's condition
cuticleDB	relational database containing all structural proteins of Arthropod cuticle identified to date	Arthropoda structural protein		http://bioinformatics.biol.uoa.gr/cuticleDB
database of Genotypes and Phenotypes	database	genotype phenotype		http://www.ncbi.nlm.nih.gov/gap
dbCRID	curated database of human Chromosome rearrangements (CRs) and associated diseases			http://c1.accurascience.com/dbCRID/
dbRES	public database of annotated RNA editing sites	RNA modification		https://deny.tsinghua.edu.cn
dbSNP	Genetics database			http://www.ncbi.nlm.nih.gov/snp
dbSUPER	a database of super-enhancers	genome human Mus		http://asntech.org/dbsuper/
dcGO	comprehensive ontology database for protein domains	Gene Ontology protein domain		https://supfam.org/SUPERFAMILY/dcGO
diArk	database for sequencing projects genome eukaryotic that provides access to all available assembled genomes and transcriptomes	genome transcriptome eukaryote		https://www.diark.org/diark
diXa Data Warehouse	Collection of toxicogenomics data sets			http://wwwdev.ebi.ac.uk/fg/dixa/
dictyBase	central resource for model organism Dictyostelium discoideum genomics	Dictyostelium discoideum		http://dictybase.org
doRiNA	source of binding site data for RNA binding proteins (RBPs) and miRNAs	RNA-binding proteins microRNA		https://dorina.mdc-berlin.de
eBLOCKS	Classifying proteins into families and super-families allows identification of functionally mportant conserved domains.			https://motif.stanford.edu/distributions/eblocks/
eBird	online database of bird observations		English German Spanish French Portuguese Brazilian Portuguese Russian Turkish Ukrainian Traditional Chinese	http://ebird.org/content/ebird/ https://ebird.org/home
eF-site - Electrostatic surface of Functional site	Electrostatic potentials and hydrophobic properties of the active sites			https://pdbj.org/eF-site
eFloraSA	Electronic Flora of South Australia			http://www.flora.sa.gov.au/
eMedicine	online clinical medical knowledge base		English	http://emedicine.medscape.com/
eNanoMapper	Database of bio-active chemical entities of nano size			http://data.enanomapper.net/	free content proprietary license
eSLDB - eukaryotic Subcellular Localization database	eSLDB (eukaryotic Subcellular Localization DataBase) collects the annotations of subcellular localization of eukaryotic proteomes.			http://gpcr.biocomp.unibo.it/esldb/
eggNOG	database of biological information			http://eggnog.embl.de/ http://eggnog5.embl.de/#/app/home	Creative Commons Attribution 4.0 International
euGenes	provides a common summary of gene and genomic information from eukaryotic organism databases	eukaryote		http://eugenes.org
euHCVdb	database oriented towards protein sequence, structure and function analyses and structural biology of HCV	Hepatitis C virus		https://euhcvdb.lyon.inserm.fr/euHCVdb/
euL1db	curated and comprehensive summary of L1HS insertion polymorphisms identified in healthy or pathological human samples and published in peer-reviewed journals	human retrotransposon disease polymorphism		http://euL1db.unice.fr	free content
exon-intron database	database of spliced mRNA sequences
fPOP	database of the protein functional surfaces identified by shape analysis	protein		http://pocket.med.wayne.edu/fpop
fRNAdb	database that hosts a large collection of non-coding transcripts including annotated/un-annotated sequences from H-inv database, NONCODE, and RNAdb	RNA		http://togodb.biosciencedbc.jp/togodb/view/frnadb_summary#en
gene2phenotype	A publicly-accessible online system designed to facilitate the development, validation, curation and distribution of large-scale, evidence-based datasets for use in diagnostic variant filtering.			https://www.ebi.ac.uk/gene2phenotype/
global microbial identifier	database of whole genome sequencing data of microorganisms
gpDB: a database of GPCRs, G-proteins, Effectors and their interactions	G-proteins and their interaction with GPCRs			http://bioinformatics.biol.uoa.gr/gpDB/
i5k Workspace@NAL	provides access, visualization, curation and dissemination arthropod genome projects	Arthropoda Genome project		https://i5k.nal.usda.gov
iBeetle-Base	database of Tribolium RNAi phenotypes	RNA interference Tribolium		http://ibeetle-base.uni-goettingen.de/
iDigBio	biodiversity data aggregator			https://www.idigbio.org
iGNM	database housing conformational dynamics data for all the proteins and their biological assemblies from PDB	protein		http://gnmdb.csb.pitt.edu
iPTMnet	bioinformatics resource for integrated understanding of protein post-translational modifications (PTMs) in systems biology context.			https://research.bioinformatics.udel.edu/iptmnet/
iPfam	A database of Pfam domain interactions			https://inoxfivestar.com/
iProClass	database provides value-added information reports for UniProtKB and unique NCBI Entrez protein sequences in UniParc	protein		https://proteininformationresource.org/pirwww/dbinfo/iproclass.shtml
iProLINK/ (PIR-Protein Information Resource)	iProLINK (integrated Protein Literature, INformation and Knowledge) is a resource to facilitate text mining research in the area of literature-based database curation, named entity recognition, and protein ontology development.			https://proteininformationresource.org/pirwww/dbinfo/iproclass.shtml
iRefIndex
iSyTE	portal for the visualization and analysis of candidate genes of pathobiology in eye development and disease	eye eye disease		https://research.bioinformatics.udel.edu/iSyTE/ppi
iUUCD	The ubiquitin and ubiquitin-like (Ub/Ubl) conjugation is one of the most important post- translational modifications (PTMs) in proteins, and regulates a large number of cellular processes,			http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-newId+-lib+PDBSite
kPath	biological pathway database			http://browser.kpath.khaos.uma.es/
lncRNASNP2 database	database providing comprehensive resources of single nucleotide polymorphisms (SNPs) in human/mouse lncRNAs.	long non-coding RNA		http://bioinfo.life.hust.edu.cn/lncRNASNP#!/
mESAdb	updated database for the multivariate analysis of sequences and expression of microRNAs from multiple taxa	microRNA		http://konulab.fen.bilkent.edu.tr/mirna/mirna.php
mVOC	microbial volatile organic compound database	volatile organic compound		https://bioinformatics.charite.de/mvoc
metaMicrobesOnline	suite of web-based comparative for genomic tools and phylogeneticanalysis from microbial genomes and metagenomes	bacterial genome metagenome		http://meta.microbesonline.org
miR2Disease	miR2Disease , a manually curated database, aims at providing a comprehensive resource of miRNA deregulation in various human diseases	RNA		http://www.mir2disease.org
miRBase	searchable database of published miRNA sequences and annotation	microRNA	English	http://www.mirbase.org
miRDB	online database for miRNA target prediction and functional annotations	microRNA		http://mirdb.org
miROrtho	web interface that provides access to putative miRNA annotations, ortholog multiple alignments and sequence data.	microRNA		https://www.ezlab.org
miRPathDB	dictionary on miRNAs and their putative target pathways	microRNA		https://mpd.bioinf.uni-sb.de
miRecords	integrated resource for microRNA-target interactions	microRNA		http://c1.accurascience.com/miRecords
mutLBSgeneDB mutated Ligand Binding Site gene DataBase	Mutations in Ligand Binding Sites gene DataBase			https://bioinfo.uth.edu/mutLBSgeneDB/
neXtProt	human protein knowledge bioinformatics resource		English	https://www.nextprot.org/	Creative Commons Attribution-NoDerivs 3.0 Unported
odonate phenotypic database	resource for dragonfly and damselfly phenotypes	Odonata phenotype		http://www.odonatephenotypicdatabase.org
ooTFD	is a database of transcription factors maintained in object-oriented and object-relational database systems	transcription factor		http://www.ifti.org/ootfd/
pE-DB	open access database for the deposition of structural ensembles	protein		https://proteinensemble.org
piRNABank	web analysis system and resource that provides information on piRNAs in the Human, Mouse, Rat and Drosophila	Piwi-interacting RNA		http://pirnabank.ibab.ac.in
piRNAclusterDB	database that provides comprehensive data on piRNA clusters in multiple species, tissues and developmental stages	Piwi-interacting RNA		http://www.smallrnagroup-mainz.de/piRNAclusterDB.html
pico-PLAZA	access point for algal comparative genomics centralizing genomic data produced by different genome sequencing initiatives	algae genome		https://bioinformatics.psb.ugent.be/plaza/versions/pico-plaza
plantRNA	database compiles tRNA gene sequences retrieved from fully annotated nuclear, plastidial and mitochondrial genomes of photosynthetic organisms	RNA		http://plantrna.ibmp.cnrs.fr
plprot	plastid protein database-integrates data from large scale proteome analyses of different plastid types.	protein plastid		http://www.plprot.ethz.ch/
sPlot	database of vegeation-plot data			https://www.idiv.de/en/sdiv/working_groups/wg_pool/splot/about_the_project.html
sfaira portal				https://theislab.github.io/sfaira-portal/
snOPY	provides comprehensive information about snoRNAs, snoRNA gene loci and target RNAs	small nucleolar RNA		http://snoopy.med.miyazaki-u.ac.jp
tRFdb	database of transfer RNA fragments (tRFs)	transfer RNA		http://genome.bioch.virginia.edu/trfdb
tRNADB-CE	database of genes and sequence information, clover-leaf structure, and results of similarity search among tRNA genes	transfer RNA		http://trna.ie.niigata-u.ac.jp/cgi-bin/trnadb/index.cgi
tRNAdb	provides graphical representations of tRNA secondary structures, aligned or un-aligned sequences and construction of consensus sequences	transfer RNA		http://trna.bioinf.uni-leipzig.de/DataOutput
uORFdb	a comprehensive literature database on eukaryotic uORF biology	eukaryote		https://www.compgen.uni-muenster.de/tools/uorfdb//index.pl?
wFleaBase	database gene and genomic information for species of the genus Daphnia	Daphnia		http://wfleabase.org/
ÉPOQ	database of bird observations		French

End of automatically generated list.

Open datasets lists

• [en] https://healthdata.gov/
• [en] https://www.ncbi.nlm.nih.gov/search/
• [en] https://en.wikipedia.org/wiki/Entrez
• [fr] http://open-data-assurance-maladie.ameli.fr/
• [fr] https://www.has-sante.fr/portail/jcms/c_1752855/fr/donnees-publiques-opendata

Non medical specific

• [**] https://wiki.dbpedia.org/
• [fr] https://www.data.gouv.fr/fr/

Open data wikiprojects

• Wikidata:WikiProject Source MetaData
• Wikidata:WikiProject Open
• Wikidata:WikiProject Open Access
• Wikidata:WikiProject Open Government Data
• Wikidata:SourceMD

Usefull metadata about these sets

instance of (P31) of open-access repository (Q7096323) and medical database (Q1916557)

Title	ID	Data type	Description	Described by	Examples	Inverse
instance of	P31	Item	instance of: that class of which this subject is a particular example and member; different from P279 (subclass of); for example: K2 is an instance of mountain; volcano is a subclass of mountain (and an instance of volcanic landform)		Nelson Mandela <instance of> human	-
subclass of	P279	Item	subclass of: this item is a subclass (subset) of that item; all instances of this item are instances of that item; different from P31 (instance of), e.g.: K2 is an instance of mountain; volcano is a subclass of mountain (and an instance of volcanic landform)		apple <subclass of> fruit	-
has part(s)	P527	Item	has part, consist of and meronymy: part of this subject; inverse property of "part of" (P361). See also "has parts of the class" (P2670).		United States Congress <has part(s)> United States Senate and United States House of Representatives	part of
part of	P361	Item	part: object of which the subject is a part (if this subject is already part of object A which is a part of object B, then please only make the subject part of object A), inverse property of "has part" (P527, see also "has parts of the class" (P2670))		ear <part of> head	has part(s)
main subject	P921	Item	topic, matter and subject: primary topic of a work (see also P180: depicts)		Marina <main subject> Rocco Granata	statement is subject of
language of work or name	P407	Item	language: language associated with this creative work (such as books, shows, songs, broadcasts or websites) or a name (for persons use "native language" (P103) and "languages spoken, written or signed" (P1412))		Autobiografia di Alice Toklas (translation) <language of work or name> Italian	-
URL	P2699	URL	URL: location of a resource	w:URL (Q42253)	Evelyn Underhill <URL> https://www.obalkyknih.cz/view_auth?auth_id=kup20030000103909	-
sponsor	P859	Item	sponsor, Tabula gratulatoria, research sponsor and patron of the arts: organization or individual that sponsors this item	w:Sponsor (commercial) (Q152478)	Kilian Jornet <sponsor> Salomon	-
described at URL	P973	URL	Internet research: item is described at the following URL	w:Internet research (Q6056040)	Mona Lisa <described at URL> http://musee.louvre.fr/oal/joconde/indexFR.html	-
formatter URL	P1630	String	URL and URL format string: web page URL; URI template from which "$1" can be automatically replaced with the effective property value on items. If the site goes offline, set it to deprecated rank. If the formatter URL changes, add a new statement with preferred rank.	w:URL (Q42253)	Wikidata <formatter URL> https://www.wikidata.org/wiki/$1 and VIAF ID <formatter URL> https://viaf.org/viaf/$1	URL match pattern
download URL	P4945	URL	download: URL which can be used to download a work	w:Download (Q7126717)	Linux kernel <download URL> https://cdn.kernel.org/pub/linux/kernel/v4.x/linux-4.15.9.tar.xz	-
search formatter URL	P4354	String	URL format string and search URL: web page search URL; URI template from which "$1" can be automatically replaced with the string to be searched for. $1 can be whatever you want.		ORCID iD <search formatter URL> https://orcid.org/orcid-search/quick-search/?searchQuery=$1 and ORCID iD <search formatter URL> https://orcid.org/orcid-search/quick-search/?searchQuery=$1	-
external data available at URL	P1325	URL	URL where external data on this item can be found		United States of America <external data available at URL> https://www.data.gov/	-
API endpoint URL	P6269	URL	web API: base URL of a web service	w:Web API (Q557770)	Wikidata <API endpoint URL> https://www.wikidata.org/w/api.php	-
SPARQL endpoint URL	P5305	URL	SPARQL endpoint: URL of the SPARQL endpoint of the database/website		Wikidata <SPARQL endpoint URL> https://query.wikidata.org/sparql	-
copyright license	P275	Item	license: license under which this copyrighted work is released	w:License (Q79719)	Inkscape <copyright license> GNU General Public License, version 2.0	-
affiliation	P1416	Item	affiliation: organization that a person or organization is affiliated with (not necessarily member of or employed by)		Raoul Bott <affiliation> Institute for Advanced Study	-
title	P1476	Monolingual text	original title and title: published name of a work, such as a newspaper article, a literary work, piece of music, a website, or a performance work		Nature <title> Nature	-
file format	P2701	Item	file format: file format, compression type, or ontology used in a file	w:File format (Q235557)	Art & Architecture Thesaurus LOD Dataset <file format> ZIP and N-Triples	-
dataset distribution	P2702	Item	dataset distribution: particular manner of distribution of a data set (database or file) that is publicly available		Art & Architecture Thesaurus <dataset distribution> Art & Architecture Thesaurus LOD Dataset	-
file extension	P1195	String	filename extension: identifier for a file format (e.g. txt for a text file) used as suffix to the file name. Don't use dot at start.	w:Filename extension (Q186157)	text file <file extension> txt	-