Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners (Q98224922)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32760427%20AND%20SRC:MED&resulttype=core&format=json

10 August 2020

title

Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners (English)

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10 August 2020

3

Luis E Eguiarte

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10 August 2020

author name string

Josué Barrera-Redondo

series ordinal

1

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10 August 2020

Daniel Piñero

series ordinal

2

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10 August 2020

publication date

15 July 2020

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10 August 2020

published in

Frontiers in Genetics

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10 August 2020

volume

11

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10 August 2020

page(s)

742

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Creative Commons Attribution 4.0 International

10 August 2020

copyright license

start time

15 July 2020

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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The population genetics of structural variants in grapevine domestication

10 February 2021

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A Three-Sample Test for Introgression

10 February 2021

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10 February 2021

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The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor

10 February 2021

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Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

10 February 2021

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Deep Genome Resequencing Reveals Artificial and Natural Selection for Visual Deterioration, Plateau Adaptability and High Prolificacy in Chinese Domestic Sheep

10 February 2021

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Whole genomes and transcriptomes reveal adaptation and domestication of pistachio

10 February 2021

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De Novo Domestication: An Alternative Route toward New Crops for the Future

10 February 2021

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A domestication history of dynamic adaptation and genomic deterioration in Sorghum

10 February 2021

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Comparative population genomics identified genomic regions and candidate genes associated with fruit domestication traits in peach

10 February 2021

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Determining factors, regulation system, and domestication of anthocyanin biosynthesis in rice leaves

10 February 2021

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A reference-grade wild soybean genome

10 February 2021

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The genetic architecture of teosinte catalyzed and constrained maize domestication

10 February 2021

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Origin and evolution of the octoploid strawberry genome

10 February 2021

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Application and future perspective of CRISPR/Cas9 genome editing in fruit crops

10 February 2021

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Copy Number Variation in Domestication

10 February 2021

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Minor allele frequency thresholds strongly affect population structure inference with genomic data sets

10 February 2021

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Domestication of cattle: Two or three events?

10 February 2021

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Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement

10 February 2021

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A re-evaluation of the domestication bottleneck from archaeogenomic evidence.

10 February 2021

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Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance

10 February 2021

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Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice

10 February 2021

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Signatures of selection and environmental adaptation across the goat genome post-domestication

10 February 2021

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Characterization of proteome variation during modern maize breeding

10 February 2021

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Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

10 February 2021

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The extent of adaptive wild introgression in crops

10 February 2021

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RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors

10 February 2021

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Genomic approaches for studying crop evolution

10 February 2021

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Human influences on the strength of phenotypic selection

10 February 2021

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DNA methylation footprints during soybean domestication and improvement

10 February 2021

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Comparative Transcriptomics of Root Development in Wild and Cultivated Carrots

10 February 2021

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Whole-Genome Duplication and Plant Macroevolution

10 February 2021

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A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome

10 February 2021

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A western Sahara centre of domestication inferred from pearl millet genomes

10 February 2021

1 reference

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Differential transcriptome patterns associated with early seedling development in a wild and a domesticated common bean (Phaseolus vulgaris L.) accession

10 February 2021

1 reference

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Genome-Wide Association Mapping for Cold Tolerance in a Core Collection of Rice (Oryza sativa L.) Landraces by Using High-Density Single Nucleotide Polymorphism Markers From Specific-Locus Amplified Fragment Sequencing

10 February 2021

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Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

10 February 2021

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Comparative analysis of the blood transcriptomes between wolves and dogs

10 February 2021

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Loter: A software package to infer local ancestry for a wide range of species.

10 February 2021

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Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia.

10 February 2021

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Pervasive introgression facilitated domestication and adaptation in the Bos species complex

10 February 2021

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Epigenetics and early domestication: differences in hypothalamic DNA methylation between red junglefowl divergently selected for high or low fear of humans.

10 February 2021

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10 February 2021

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Targeted resequencing reveals genomic signatures of barley domestication.

10 February 2021

1 reference

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Convergent genomic signatures of domestication in sheep and goats.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Epigenetic perspectives on the evolution and domestication of polyploid plant and crops.

10 February 2021

1 reference

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The axolotl genome and the evolution of key tissue formation regulators.

10 February 2021

1 reference

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Population size may shape the accumulation of functional mutations following domestication.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.

10 February 2021

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From Genomes to GENE-omes: Exome Sequencing Concept and Applications in Crop Improvement.

10 February 2021

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A novel linkage-disequilibrium corrected genomic relationship matrix for SNP-heritability estimation and genomic prediction.

10 February 2021

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Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Domestication Genomics of the Open-Pollinated Scarlet Runner Bean (Phaseolus coccineus L.).

10 February 2021

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DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.

10 February 2021

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Genetic costs of domestication and improvement.

10 February 2021

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Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes

10 February 2021

1 reference

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Domestication reduces alternative splicing expression variations in sorghum.

10 February 2021

1 reference

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LinkImputeR: user-guided genotype calling and imputation for non-model organisms

10 February 2021

1 reference

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10 Years of GWAS Discovery: Biology, Function, and Translation

10 February 2021

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Assessing elements of an extended evolutionary synthesis for plant domestication and agricultural origin research

10 February 2021

1 reference

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Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons.

10 February 2021

1 reference

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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene

10 February 2021

1 reference

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A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.).

10 February 2021

1 reference

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A chromosome conformation capture ordered sequence of the barley genome

10 February 2021

1 reference

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A survey of methods and tools to detect recent and strong positive selection

10 February 2021

1 reference

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Genetic Characterization of Dog Personality Traits.

10 February 2021

1 reference

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Rapid breeding of parthenocarpic tomato plants using CRISPR/Cas9.

10 February 2021

1 reference

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Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus section Quercus).

10 February 2021

1 reference

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Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

10 February 2021

1 reference

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The pangenome of hexaploid bread wheat

10 February 2021

1 reference

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Single-stranded DNA library preparation from highly degraded DNA using T4 DNA ligase

10 February 2021

1 reference

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A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The earliest maize from San Marcos Tehuacán is a partial domesticate with genomic evidence of inbreeding

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication

10 February 2021

1 reference

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Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

10 February 2021

1 reference

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The pangenome of an agronomically important crop plant Brassica oleracea

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The origin and evolution of cell types

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Post-transcriptional gene regulation by mRNA modifications.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The present and future of de novo whole-genome assembly

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The Evolutionary Origin and Genetic Makeup of Domestic Horses

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Evolutionary Genomics of Peach and Almond Domestication

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

pcadapt: an R package to perform genome scans for selection based on principal component analysis.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Detection of selection signatures of population-specific genomic regions selected during domestication process in Jinhua pigs

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Integration of omic networks in a developmental atlas of maize.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Domestication history and geographical adaptation inferred from a SNP map of African rice

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Advancements in Next-Generation Sequencing

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genomic and archaeological evidence suggest a dual origin of domestic dogs

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The real cost of sequencing: scaling computation to keep pace with data generation

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Transcriptome Analysis in Domesticated Species: Challenges and Strategies

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Lessons from Domestication: Targeting Cis-Regulatory Elements for Crop Improvement

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Analysis of Whole Transcriptome Sequencing Data: Workflow and Software

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Harnessing the power of RADseq for ecological and evolutionary genomics

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Towards plant pangenomics

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

DNA N(6)-methyladenine: a new epigenetic mark in eukaryotes?

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genomics of crop wild relatives: expanding the gene pool for crop improvement

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Epigenetic inheritance and the missing heritability

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Exome Sequencing: Current and Future Perspectives

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Demographic inference using genetic data from a single individual: Separating population size variation from population structure

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Choosing the Right Tool for the Job: RNAi, TALEN, or CRISPR.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Seven common mistakes in population genetics and how to avoid them.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Comparison of Exome and Genome Sequencing Technologies for the Complete Capture of Protein-Coding Regions

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The Accumulation of Deleterious Mutations as a Consequence of Domestication and Improvement in Sunflowers and Other Compositae Crops

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

N6-methyldeoxyadenosine marks active transcription start sites in Chlamydomonas

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Relative extended haplotype homozygosity signals across breeds reveal dairy and beef specific signatures of selection

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Global epigenomic analysis indicates that epialleles contribute to Allele-specific expression via Allele-specific histone modifications in hybrid rice

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Exploring population size changes using SNP frequency spectra

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Epigenetics and transgenerational inheritance in domesticated farm animals

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Role of transcriptional regulation in the evolution of plant phenotype: A dynamic systems approach

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Patterns of genomic changes with crop domestication and breeding

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Adding 'epi-' to behaviour genetics: implications for animal domestication

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Advances and limits of using population genetics to understand local adaptation

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Plant science. Biosynthesis, regulation, and domestication of bitterness in cucumber

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Post-translational modifications of histones that influence nucleosome dynamics

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

ANGSD: Analysis of Next Generation Sequencing Data.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Domestication genomics: evidence from animals

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The role of cis regulatory evolution in maize domestication.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Error estimates for the analysis of differential expression from RNA-seq count data

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Cassava genome from a wild ancestor to cultivated varieties

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Evaluating the use of ABBA-BABA statistics to locate introgressed loci

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Local and global ancestry inference and applications to genetic association analysis for admixed populations

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Mapping ecologically relevant social behaviours by gene knockout in wild mice.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Inferring human population size and separation history from multiple genome sequences

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

King penguin demography since the last glaciation inferred from genome-wide data.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A reference genome for common bean and genome-wide analysis of dual domestications

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Comparative analysis of genome-wide chromosomal histone modification patterns in maize cultivars and their wild relatives.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Tools, resources and databases for SNPs and indels in sequences: a review

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Current perspectives and the future of domestication studies

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Storytelling and story testing in domestication

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

fastSTRUCTURE: variational inference of population structure in large SNP data sets

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Transgenerational epigenetic inheritance: myths and mechanisms

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The contribution of genetic and genomic approaches to plant domestication studies

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Sequencing depth and coverage: key considerations in genomic analyses

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genome-scale CRISPR-Cas9 knockout screening in human cells

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Detecting natural selection in genomic data

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Assessing the effect of sequencing depth and sample size in population genetics inferences

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Evolution of crop species: genetics of domestication and diversification

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genome sequencing and population genomics in non-model organisms

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Haplotype estimation using sequencing reads

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Stacks: an analysis tool set for population genomics

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

RNA-seq analysis of allele-specific expression, hybrid effects, and regulatory divergence in hybrids compared with their parents from natural populations

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Architecture and evolution of a minute plant genome.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Artificial selection on brain-expressed genes during the domestication of dog.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Signatures of diversifying selection in European pig breeds.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Patterns of population epigenomic diversity.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Multiplex genome engineering using CRISPR/Cas systems

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Inference of population splits and mixtures from genome-wide allele frequency data

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Epialleles in plant evolution

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A map of rice genome variation reveals the origin of cultivated rice

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A comparison of brain gene expression levels in domesticated and wild animals

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Local ancestry corrects for population structure in Saccharomyces cerevisiae genome-wide association studies

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genome-wide association study (GWAS) of resistance to head smut in maize

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Using identity by descent estimation with dense genotype data to detect positive selection

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Reshaping of the maize transcriptome by domestication.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genome-wide genetic changes during modern breeding of maize

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Comparative population genomics of maize domestication and improvement

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The tomato genome sequence provides insights into fleshy fruit evolution

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A beginner's guide to eukaryotic genome annotation

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Fast and accurate inference of local ancestry in Latino populations

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Chromosome rearrangements during domestication of cucumber as revealed by high-density genetic mapping and draft genome assembly.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Inference of human population history from individual whole-genome sequences

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Design and validation issues in RNA-seq experiments

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A regression-based approach to selection mapping

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Testing for ancient admixture between closely related populations

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Regulation and function of DNA methylation in plants and animals.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

RADSeq: next-generation population genetics

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Detecting selection in population trees: the Lewontin and Krakauer test extended

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Validation of a candidate deoxynivalenol-inactivating UDP-glucosyltransferase from barley by heterologous expression in yeast

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genetic diversity in farm animals--a review

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The next generation of molecular markers from massively parallel sequencing of pooled DNA samples

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Environmental epigenetic modifications and reprogramming-recalcitrant genes

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Population differentiation as a test for selective sweeps

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The B73 Maize Genome: Complexity, Diversity, and Dynamics

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Epigenetic responses to environmental change and their evolutionary implications

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Fast model-based estimation of ancestry in unrelated individuals

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Detecting loci under selection in a hierarchically structured population

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Sensitive detection of chromosomal segments of distinct ancestry in admixed populations

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Statistical inferences in phylogeography

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Bayesian inference of population size history from multiple loci

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genome-wide detection and characterization of positive selection in human populations

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Plant domestication, a unique opportunity to identify the genetic basis of adaptation

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The Association of Size Differences with Seed-Coat Pattern and Pigmentation in PHASEOLUS VULGARIS.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Population structure and eigenanalysis

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Statistical tests for detecting positive selection by utilizing high-frequency variants

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Reconstructing genetic ancestry blocks in admixed individuals

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A map of recent positive selection in the human genome

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Documenting domestication: the intersection of genetics and archaeology

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The signature of positive selection on standing genetic variation

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Screening for recently selected alleles by analysis of human haplotype similarity

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Global landscape of recent inferred Darwinian selection for Homo sapiens

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A note on exact tests of Hardy-Weinberg equilibrium

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Serial SimCoal: a population genetics model for data from multiple populations and points in time

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Linkage disequilibrium as a signature of selective sweeps

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Detecting recent positive selection in the human genome from haplotype structure

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Population genomics: a bridge from evolutionary history to genetic medicine

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Hitchhiking under positive Darwinian selection

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Inference of population structure using multilocus genotype data

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

teosinte branched1 and the origin of maize: evidence for epistasis and the evolution of dominance

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

The hitch-hiking effect of a favourable gene

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Genetic analysis of the morphological differences between maize and teosinte

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

Letters to the editors: Lewontin-Krakauer test for neutral genes

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7373799

10 February 2021

Identifiers

DOI

10.3389/FGENE.2020.00742

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32760427%20AND%20SRC:MED&resulttype=core&format=json

10 August 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32760427%20AND%20SRC:MED&resulttype=core&format=json

10 August 2020

1 reference