How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? (Q38889056)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27022035%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

title

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? (English)

1 reference

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31 March 2020

1 reference

1 reference

corrigendum / erratum

Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

0 references

author

Geoffrey J. Barton

12

1 reference

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31 March 2020

Nicholas Schurch

1

1 reference

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31 March 2020

Pieta Schofield

2

1 reference

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31 March 2020

Christian Cole

4

1 reference

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31 March 2020

Karim Gharbi

8

1 reference

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31 March 2020

Gordon G Simpson

9

1 reference

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31 March 2020

Tom Owen-Hughes

10

1 reference

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31 March 2020

Mark Blaxter

11

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31 March 2020

author name string

Marek Gierliński

3

1 reference

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31 March 2020

Alexander Sherstnev

5

1 reference

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31 March 2020

Vijender Singh

6

1 reference

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31 March 2020

Nicola Wrobel

7

1 reference

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31 March 2020

language of work or name

English

0 references

publication date

28 March 2016

1 reference

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31 March 2020

1 reference

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31 March 2020

volume

22

1 reference

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31 March 2020

page(s)

839-851

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31 March 2020

issue

6

1 reference

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describes a project that uses

31 March 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4878611

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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A comparison of methods for differential expression analysis of RNA-seq data

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Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data

9 September 2017

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9 September 2017

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9 September 2017

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Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

1 reference

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9 September 2017

1 reference

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

9 September 2017

1 reference

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A haplotype map of the human genome

9 September 2017

1 reference

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9 September 2017

1 reference

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How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach

9 September 2017

1 reference

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ATP-dependent nucleosome remodeling

9 September 2017

1 reference

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Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae

9 September 2017

1 reference

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Dissecting the regulatory circuitry of a eukaryotic genome

9 September 2017

1 reference

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Five SWI genes are required for expression of the HO gene in yeast

9 September 2017

1 reference

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Genes affecting the regulation of SUC2 gene expression by glucose repression in Saccharomyces cerevisiae

9 September 2017

1 reference

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Preparation of high molecular weight RNA

9 September 2017

1 reference

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Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure

9 September 2017

1 reference

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Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription

9 September 2017

1 reference

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EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

9 September 2017

1 reference

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Improved statistical tests for differential gene expression by shrinking variance components estimates.

9 September 2017

1 reference

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Comparison of software packages for detecting differential expression in RNA-seq studies

14 September 2017

1 reference

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17 June 2018

1 reference

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A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

17 June 2018

1 reference

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Sequencing technology does not eliminate biological variability

17 June 2018

1 reference

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A functional interaction between the C-terminal domain of RNA polymerase II and the negative regulator SIN1.

17 June 2018

1 reference

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Pvclust: an R package for assessing the uncertainty in hierarchical clustering.

17 June 2018

1 reference

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Hierarchical Clustering of DNA k-mer Counts in RNAseq Fastq Files Identifies Sample Heterogeneities

22 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27022035

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Collective judgment predicts disease-associated single nucleotide variants

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1261/RNA.053959.115

On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other

1 reference

2 April 2022

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Identifiers

DOI

10.1261/RNA.053959.115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27022035%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

1 reference

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27022035%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

1 reference