Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon (Q36530054)

14 August 2017

Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon (English)

1 reference

14 August 2017

1 reference

9

1 reference

14 August 2017

7

Bo Peng

1 reference

14 August 2017

Paul Ragnar Berg

8

0 references

Anti Vasemägi

object named as

Anti Vasemägi

1

0 references

Philip Mcginnity

object named as

Philip McGinnity

3

0 references

Tom F. Cross

4

object named as

Tom Cross

1 reference

14 August 2017

Jan Nilsson

2

1 reference

PMCID

3544263

14 August 2017

Patrick O'Reilly

5

1 reference

PMCID

3544263

14 August 2017

Brian Glebe

6

1 reference

14 August 2017

27 December 2012

1 reference

Comparative and Functional Genomics

14 August 2017

1 reference

14 August 2017

2012

1 reference

14 August 2017

628204

1 reference

Creative Commons Attribution 3.0 Unported

14 August 2017

start time

1 January 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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Fitness of hatchery-reared salmonids in the wild

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Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

30 September 2017

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Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis

30 September 2017

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A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

30 September 2017

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Outlier SNPs show more genetic structure between two Bay of Fundy metapopulations of Atlantic salmon than do neutral SNPs.

30 September 2017

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Genome-wide analysis of a long-term evolution experiment with Drosophila

30 September 2017

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Mapping of quantitative trait loci for flesh colour and growth traits in Atlantic salmon (Salmo salar).

30 September 2017

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Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon

30 September 2017

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Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

30 September 2017

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Fast transcriptional responses to domestication in the brook charr Salvelinus fontinalis

30 September 2017

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The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

30 September 2017

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A whole genome Bayesian scan for adaptive genetic divergence in West African cattle

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

The genome response to artificial selection: a case study in dairy cattle

30 September 2017

1 reference

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Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait

30 September 2017

1 reference

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From wild animals to domestic pets, an evolutionary view of domestication

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

A genome scan for positive selection in thoroughbred horses

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Domestication causes large-scale effects on gene expression in rainbow trout: analysis of muscle, liver and brain transcriptomes

30 September 2017

1 reference

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Constructing genomic maps of positive selection in humans: where do we go from here?

30 September 2017

1 reference

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Genome wide signatures of positive selection: the comparison of independent samples and the identification of regions associated to traits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Animal evolution during domestication: the domesticated fox as a model

30 September 2017

1 reference

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Domestication and growth hormone transgenesis cause similar changes in gene expression in coho salmon (Oncorhynchus kisutch).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

The nature of selection during plant domestication

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Adaptations to climate in candidate genes for common metabolic disorders

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Adaptation from standing genetic variation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Genetic effects of captive breeding cause a rapid, cumulative fitness decline in the wild

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Patterns of population differentiation of candidate genes for cardiovascular disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Soft sweeps III: the signature of positive selection from recurrent mutation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

The genetic architecture of normal variation in human pigmentation: an evolutionary perspective and model.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Genomic signatures of positive selection in humans and the limits of outlier approaches

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Positive natural selection in the human lineage

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

How reliable are empirical genomic scans for selective sweeps?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Selection under domestication: evidence for a sweep in the rice waxy genomic region

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Soft sweeps II--molecular population genetics of adaptation from recurrent mutation or migration

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Selective sweep mapping of genes with large phenotypic effects

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Challenges for identifying functionally important genetic variation: the promise of combining complementary research strategies.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

simuPOP: a forward-time population genetics simulation environment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Using genome scans of DNA polymorphism to infer adaptive population divergence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Soft sweeps: molecular population genetics of adaptation from standing genetic variation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Linkage disequilibrium as a signature of selective sweeps

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Pattern of diversity in the genomic region near the maize domestication gene tb1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Statistical significance for genomewide studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

The signature of positive selection at randomly chosen loci.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Chip-based genotyping by mass spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

The hitch-hiking effect of a favourable gene

30 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

30 September 2017

12 December 2020

Performing the exact test of Hardy-Weinberg proportion for multiple alleles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Detecting loci under selection in a hierarchically structured population

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

The limits of selection during maize domestication.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Impact of naturally spawning captive-bred Atlantic salmon on wild populations: depressed recruitment and increased risk of climate-mediated extinction.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Genetic consequences of interbreeding between farmed and wild Atlantic salmon: insights from the transcriptome.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

The effects of artificial selection on the maize genome

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

QTL for body weight and condition factor in Atlantic salmon (Salmo salar): comparative analysis with rainbow trout (Oncorhynchus mykiss) and Arctic charr (Salvelinus alpinus).

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

Experimental evidence for major histocompatibility complex-allele-specific resistance to a bacterial infection.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3544263

A direct approach to false discovery rates

21 September 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F628204

Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F628204

Expressed Sequence Tag-Linked Microsatellites as a Source of Gene-Associated Polymorphisms for Detecting Signatures of Divergent Selection in Atlantic Salmon (Salmo salar L.)

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F628204

Analysis of gene associated tandem repeat markers in Atlantic salmon (Salmo salar L.) populations: implications for restoration and conservation in the Baltic Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F628204

Seventy-five EST-linked Atlantic salmon (Salmo salar L.) microsatellite markers and their cross-amplification in five salmonid species

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F628204

Detection of QTL affecting harvest traits in a commercial Atlantic salmon population

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F628204

Extensive immigration from compensatory hatchery releases into wild Atlantic salmon population in the Baltic sea: spatio-temporal analysis over 18 years

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F628204

Beyond MHC: signals of elevated selection pressure on Atlantic salmon (Salmo salar) immune-relevant loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F628204

Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon

21 January 2018

1 reference

PubMed

12 December 2020

Conservation genomics of Atlantic salmon: SNPs associated with QTLs for adaptive traits in parr from four trans-Atlantic backcrosses

1 reference

PubMed

12 December 2020

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

1 reference

PubMed

12 December 2020

GENEPOP (Version 1.2): Population Genetics Software for Exact Tests and Ecumenicism

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/OXFORDJOURNALS.JHERED.A111573

Identifiers

DOI

10.1155/2012/628204

1 reference

14 August 2017

1 reference

14 August 2017

1 reference

PMCID

3544263