Assessing the effect of sequencing depth and sample size in population genetics inferences (Q35048621)

6 August 2017

Assessing the effect of sequencing depth and sample size in population genetics inferences (English)

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6 August 2017

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Matteo Fumagalli

1

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language of work or name

English

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publication date

18 November 2013

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6 August 2017

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6 August 2017

8

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6 August 2017

e79667

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6 August 2017

11

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Creative Commons Attribution 4.0 International

6 August 2017

start time

18 November 2013

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Quantifying population genetic differentiation from next-generation sequencing data

8 July 2018

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Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

8 July 2018

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Deep whole-genome sequencing of 100 southeast Asian Malays

8 July 2018

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Anisotropic isolation by distance: the main orientations of human genetic differentiation.

8 July 2018

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An integrated map of genetic variation from 1,092 human genomes

8 July 2018

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A map of rice genome variation reveals the origin of cultivated rice

8 July 2018

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SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data

8 July 2018

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Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species

8 July 2018

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Recent explosive human population growth has resulted in an excess of rare genetic variants

8 July 2018

1 reference

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Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data

8 July 2018

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A fine-scale chimpanzee genetic map from population sequencing

8 July 2018

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Exome sequencing as a tool for Mendelian disease gene discovery

8 July 2018

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A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

8 July 2018

1 reference

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Inference of population mutation rate and detection of segregating sites from next-generation sequence data

8 July 2018

1 reference

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Estimation of allele frequency and association mapping using next-generation sequencing data

8 July 2018

1 reference

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Inference of site frequency spectra from high-throughput sequence data: quantification of selection on nonsynonymous and synonymous sites in humans

8 July 2018

1 reference

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Genotype and SNP calling from next-generation sequencing data

8 July 2018

1 reference

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A hierarchical Bayesian model for next-generation population genomics

8 July 2018

1 reference

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A map of human genome variation from population-scale sequencing

8 July 2018

1 reference

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Sequencing of 50 human exomes reveals adaptation to high altitude

8 July 2018

1 reference

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Ascertainment biases in SNP chips affect measures of population divergence

8 July 2018

1 reference

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Design of association studies with pooled or un-pooled next-generation sequencing data

8 July 2018

1 reference

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Conservation genetics in transition to conservation genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Comparing spatial maps of human population-genetic variation using Procrustes analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Population genetic inference from genomic sequence variation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Sequencing technologies - the next generation

8 July 2018

1 reference

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Genetics in geographically structured populations: defining, estimating and interpreting F(ST)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Estimation of allele frequencies from high-coverage genome-sequencing projects

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Mapping short DNA sequencing reads and calling variants using mapping quality scores

8 July 2018

1 reference

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Population structure and eigenanalysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Principal components analysis corrects for stratification in genome-wide association studies

8 July 2018

1 reference

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Molecular signatures of natural selection

8 July 2018

1 reference

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Likelihood-based inference for genetic correlation coefficients

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Case-control studies of association in structured or admixed populations.

8 July 2018

1 reference

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Statistical tests of neutrality of mutations

8 July 2018

1 reference

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A test of neutral molecular evolution based on nucleotide data

8 July 2018

1 reference

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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Estimation of levels of gene flow from DNA sequence data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

Synthetic Maps of Human Gene Frequencies in Europeans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832539

10.1371/JOURNAL.PONE.0079667

8 July 2018

Identifiers

DOI

1 reference

release_65m2l63funhxxlydnowrsrjczm

6 August 2017

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1 reference

Fatcat

https://api.fatcat.wiki/v0/release/65m2l63funhxxlydnowrsrjczm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3832539

1 reference

6 August 2017

1 reference

PubMed ID

24260275