Regulatory Enhancer-Core-Promoter Communication via Transcription Factors and Cofactors. (Q38999725)

8 September 2017

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title

Regulatory Enhancer-Core-Promoter Communication via Transcription Factors and Cofactors (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

12 May 2020

author name string

Muhammad A Zabidi

series ordinal

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

12 May 2020

Alexander Stark

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

12 May 2020

publication date

2 November 2016

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8 September 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

12 May 2020

volume

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

12 May 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

12 May 2020

page(s)

801-814

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

Epigenetic protein families: a new frontier for drug discovery

12 May 2020

cites work

1 reference

12 December 2020

putzig is required for cell proliferation and regulates notch activity in Drosophila

1 reference

12 December 2020

Caudal, a key developmental regulator, is a DPE-specific transcriptional factor

1 reference

12 December 2020

Human TAFII30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor

1 reference

12 December 2020

DREF is required for cell and organismal growth in Drosophila and functions downstream of the nutrition/TOR pathway.

1 reference

12 December 2020

Dynamic chromatin organization during foregut development mediated by the organ selector gene PHA-4/FoxA

1 reference

12 December 2020

Structures of three distinct activator-TFIID complexes

1 reference

12 December 2020

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

1 reference

12 December 2020

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

1 reference

12 December 2020

Cancer epigenetics: from mechanism to therapy

1 reference

12 December 2020

Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID).

1 reference

12 December 2020

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

1 reference

12 December 2020

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

1 reference

12 December 2020

Transcription properties of a cell type-specific TATA-binding protein, TRF.

1 reference

12 December 2020

Enhancer transcripts mark active estrogen receptor binding sites

1 reference

12 December 2020

Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription.

1 reference

12 December 2020

Characterization of transcription from TATA-less promoters: identification of a new core promoter element XCPE2 and analysis of factor requirements

1 reference

12 December 2020

Recruitment of Mediator Complex by Cell Type and Stage-Specific Factors Required for Tissue-Specific TAF Dependent Gene Activation in an Adult Stem Cell Lineage

1 reference

12 December 2020

The drosophila MSL complex acetylates histone H4 at lysine 16, a chromatin modification linked to dosage compensation

1 reference

12 December 2020

Transcription coactivator TRAP220 is required for PPAR gamma 2-stimulated adipogenesis

1 reference

12 December 2020

Acetylation of RNA polymerase II regulates growth-factor-induced gene transcription in mammalian cells

1 reference

12 December 2020

Genome-Wide Mapping Targets of the Metazoan Chromatin Remodeling Factor NURF Reveals Nucleosome Remodeling at Enhancers, Core Promoters and Gene Insulators

1 reference

12 December 2020

A developmentally stable chromatin structure in the human beta-globin gene cluster

1 reference

12 December 2020

An atlas of active enhancers across human cell types and tissues

1 reference

12 December 2020

Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator

1 reference

12 December 2020

Systematic determination of patterns of gene expression during Drosophila embryogenesis

1 reference

12 December 2020

Insulator dysfunction and oncogene activation in IDH mutant gliomas

1 reference

12 December 2020

hTAF(II)68, a novel RNA/ssDNA-binding protein with homology to the pro-oncoproteins TLS/FUS and EWS is associated with both TFIID and RNA polymerase II

1 reference

12 December 2020

Disruption of the abdominal-B promoter tethering element results in a loss of long-range enhancer-directed Hox gene expression in Drosophila

1 reference

12 December 2020

Structure of promoter-bound TFIID and model of human pre-initiation complex assembly

1 reference

12 December 2020

Function of TAF(II)-containing complex without TBP in transcription by RNA polymerase II

1 reference

12 December 2020

A basal transcription factor that activates or represses transcription.

1 reference

12 December 2020

Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex

1 reference

12 December 2020

Beyond editing: repurposing CRISPR-Cas9 for precision genome regulation and interrogation

1 reference

12 December 2020

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

1 reference

12 December 2020

Testis-specific TAF homologs collaborate to control a tissue-specific transcription program.

1 reference

12 December 2020

Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model.

1 reference

12 December 2020

The DRE/DREF transcriptional regulatory system: a master key for cell proliferation

1 reference

12 December 2020

Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters

1 reference

12 December 2020

Different core promoters possess distinct regulatory activities in the Drosophila embryo

1 reference

12 December 2020

Drosophila melanogaster Hox transcription factors access the RNA polymerase II machinery through direct homeodomain binding to a conserved motif of mediator subunit Med19

1 reference

12 December 2020

Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia

1 reference

12 December 2020

Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers

1 reference

12 December 2020

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

1 reference

12 December 2020

High-throughput functional comparison of promoter and enhancer activities

1 reference

12 December 2020

A novel promoter-tethering element regulates enhancer-driven gene expression at the bithorax complex in the Drosophila embryo

1 reference

12 December 2020

Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila

1 reference

12 December 2020

Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping

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12 December 2020

BET Bromodomain Inhibition Suppresses the Function of Hematopoietic Transcription Factors in Acute Myeloid Leukemia

1 reference

12 December 2020

The "beta-like-globin" gene domain in human erythroid cells

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12 December 2020

Expression of a β-globin gene is enhanced by remote SV40 DNA sequences

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12 December 2020

Perspectives on the RNA polymerase II core promoter

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12 December 2020

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

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12 December 2020

DREF is required for EGFR signalling during Drosophila wing vein development.

1 reference

12 December 2020

A novel cis-regulatory element, the PTS, mediates an anti-insulator activity in the Drosophila embryo

1 reference

12 December 2020

Mammalian RNA polymerase II core promoters: insights from genome-wide studies

1 reference

12 December 2020

Understanding how cis-regulatory function is encoded in DNA sequence using massively parallel reporter assays and designed sequences.

1 reference

12 December 2020

Functional and topological characteristics of mammalian regulatory domains.

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12 December 2020

Design and synthesis of a cell-permeable synthetic transcription factor mimic

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12 December 2020

mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila

1 reference

12 December 2020

Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor

1 reference

12 December 2020

A regulatory archipelago controls Hox genes transcription in digits

1 reference

12 December 2020

An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape.

1 reference

12 December 2020

Enhancer Control of Transcriptional Bursting

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12 December 2020

Looping and interaction between hypersensitive sites in the active beta-globin locus

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12 December 2020

Spatial organization of active and inactive genes and noncoding DNA within chromosome territories

1 reference

12 December 2020

Orchestrated response: a symphony of transcription factors for gene control

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12 December 2020

The nonspecific lethal complex is a transcriptional regulator in Drosophila

1 reference

12 December 2020

Human fetal to adult hemoglobin switching: changes in chromatin structure of the beta-globin gene locus

1 reference

12 December 2020

A selective inhibitor of EZH2 blocks H3K27 methylation and kills mutant lymphoma cells

1 reference

12 December 2020

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.

1 reference

12 December 2020

A nonnatural transcriptional coactivator

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12 December 2020

Structural basis of transcription initiation by RNA polymerase II.

1 reference

12 December 2020

Activation of proto-oncogenes by disruption of chromosome neighborhoods.

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12 December 2020

Promoter specificity mediates the independent regulation of neighboring genes.

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12 December 2020

Transcriptional enhancers: from properties to genome-wide predictions

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12 December 2020

Selectivity, sharing and competitive interactions in the regulation of Hoxb genes

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12 December 2020

Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila.

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12 December 2020

Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor

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12 December 2020

Two independent transcription initiation codes overlap on vertebrate core promoters

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12 December 2020

Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains

1 reference

12 December 2020

RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia

1 reference

12 December 2020

Functional domains and upstream activation properties of cloned human TATA binding protein

1 reference

12 December 2020

E2F1 represses beta-catenin transcription and is antagonized by both pRB and CDK8

1 reference

12 December 2020

Transcription factories are nuclear subcompartments that remain in the absence of transcription

1 reference

12 December 2020

DREF is required for efficient growth and cell cycle progression in Drosophila imaginal discs

1 reference

12 December 2020

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

1 reference

12 December 2020

The Drosophila Translational Control Element (TCE) is required for high-level transcription of many genes that are specifically expressed in testes

1 reference

12 December 2020

Spatial partitioning of the regulatory landscape of the X-inactivation centre

1 reference

12 December 2020

Enhancer loops appear stable during development and are associated with paused polymerase.

1 reference

12 December 2020

Transcriptional activation by recruitment

1 reference

12 December 2020

TAD disruption as oncogenic driver

1 reference

12 December 2020

DNA binding site selection by RNA polymerase II TAFs: a TAF(II)250-TAF(II)150 complex recognizes the initiator

1 reference

12 December 2020

Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction

1 reference

12 December 2020

Transcriptional coactivator complexes

1 reference

12 December 2020

MEF2 is an in vivo immune-metabolic switch

1 reference

12 December 2020

MED23 mutation links intellectual disability to dysregulation of immediate early gene expression.

1 reference

12 December 2020

The NSL complex regulates housekeeping genes in Drosophila.

1 reference

12 December 2020

Transcriptional regulators form diverse groups with context-dependent regulatory functions

1 reference

12 December 2020

Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

1 reference

12 December 2020

Transcription factors: from enhancer binding to developmental control

1 reference

12 December 2020

The RNA polymerase II core promoter

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12 December 2020

A transcriptional terminator between enhancer and promoter does not affect remote transcriptional control

1 reference

12 December 2020

Computational analysis of core promoters in the Drosophila genome

1 reference

12 December 2020

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

1 reference

12 December 2020

Developmental regulation of transcription initiation: more than just changing the actors

1 reference

12 December 2020

Coactivator cross-talk specifies transcriptional output

1 reference

12 December 2020

TAF4 nucleates a core subcomplex of TFIID and mediates activated transcription from a TATA-less promoter

1 reference

12 December 2020

DAF-16 employs the chromatin remodeller SWI/SNF to promote stress resistance and longevity

1 reference

12 December 2020

A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia

1 reference

12 December 2020

TT-seq maps the human transient transcriptome

1 reference

12 December 2020

Quantitative Analyses of Core Promoters Enable Precise Engineering of Regulated Gene Expression in Mammalian Cells

1 reference

12 December 2020

TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila

1 reference

12 December 2020

Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs

1 reference

12 December 2020

TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation.

1 reference

12 December 2020

Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin

1 reference

12 December 2020

An oestrogen-receptor-α-bound human chromatin interactome

1 reference

12 December 2020

Architectural and Functional Commonalities between Enhancers and Promoters

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12 December 2020

Two closely spaced promoters are equally activated by a remote enhancer: evidence against a scanning model for enhancer action

1 reference

12 December 2020

The Hierarchy of Transcriptional Activation: From Enhancer to Promoter

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12 December 2020

Tissue-specific TAFs counteract Polycomb to turn on terminal differentiation.

1 reference

12 December 2020

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

1 reference

12 December 2020

Human TFIID binds to core promoter DNA in a reorganized structural state

1 reference

12 December 2020

The Trithorax-like gene encodes the Drosophila GAGA factor.

1 reference

12 December 2020

Reactivation of developmentally silenced globin genes by forced chromatin looping.

1 reference

12 December 2020

Chromator is required for proper microtubule spindle formation and mitosis in Drosophila

1 reference

12 December 2020

The hierarchy of the 3D genome

1 reference

12 December 2020

An ARC/Mediator subunit required for SREBP control of cholesterol and lipid homeostasis

1 reference

12 December 2020

Topological domains in mammalian genomes identified by analysis of chromatin interactions

1 reference

12 December 2020

TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA.

1 reference

12 December 2020

GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters

1 reference

12 December 2020

Distant activation of transcription: mechanisms of enhancer action

1 reference

12 December 2020

Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription

1 reference

12 December 2020

The chromodomain protein, Chromator, interacts with JIL-1 kinase and regulates the structure of Drosophila polytene chromosomes

1 reference

12 December 2020

Genome editing. The new frontier of genome engineering with CRISPR-Cas9

1 reference

12 December 2020

A discrete transition zone organizes the topological and regulatory autonomy of the adjacent tfap2c and bmp7 genes

1 reference

12 December 2020

Capturing chromosome conformation

1 reference

12 December 2020

Drosophila TRF2 is a preferential core promoter regulator

1 reference

12 December 2020

Global quantification of mammalian gene expression control

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12 December 2020

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

1 reference

12 December 2020

Genome-scale functional characterization of Drosophila developmental enhancers in vivo

1 reference

12 December 2020

Long-range chromatin regulatory interactions in vivo

1 reference

12 December 2020

Cloning of a transcriptionally active human TATA binding factor

1 reference

12 December 2020

Chromatin Domains: The Unit of Chromosome Organization

1 reference

12 December 2020

TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription

1 reference

12 December 2020

Mediator MED23 plays opposing roles in directing smooth muscle cell and adipocyte differentiation.

1 reference

12 December 2020

Transcription of histone gene cluster by differential core-promoter factors

1 reference

12 December 2020

Embryonic priming of a miRNA locus predetermines postmitotic neuronal left/right asymmetry in C. elegans

1 reference

12 December 2020

Compatibility between enhancers and promoters determines the transcriptional specificity of gooseberry and gooseberry neuro in the Drosophila embryo

1 reference

12 December 2020

Genome-wide quantitative enhancer activity maps identified by STARR-seq

1 reference

12 December 2020

Activation of gene expression by small molecule transcription factors

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12 December 2020

Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos

1 reference

12 December 2020

The role of general initiation factors in transcription by RNA polymerase II

1 reference

12 December 2020

Distinct TFIID complexes mediate the effect of different transcriptional activators

1 reference

12 December 2020

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

1 reference

12 December 2020

Genetic Tailors: CTCF and Cohesin Shape the Genome During Evolution.

1 reference

12 December 2020

BET Bromodomain Inhibition Releases the Mediator Complex from Select cis-Regulatory Elements

1 reference

12 December 2020

Shifting players and paradigms in cell-specific transcription

1 reference

12 December 2020

Sequence features of yeast and human core promoters that are predictive of maximal promoter activity

1 reference

12 December 2020

Three-dimensional folding and functional organization principles of the Drosophila genome

1 reference

12 December 2020

Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate

1 reference

12 December 2020

10.1016/J.TIG.2016.10.003

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

12 May 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6795546&resulttype=core&format=json

12 May 2020

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