Parallel profiling of the transcriptome, cistrome, and epigenome in the cellular response to ionizing radiation (Q38995173)

8 September 2017

Parallel profiling of the transcriptome, cistrome, and epigenome in the cellular response to ionizing radiation (English)

1 reference

8 September 2017

0 references

2

Hans-Jörg Warnatz

0 references

Wilfried Nietfeld

10

object named as

Wilfried Nietfeld

0 references

Marie-Laure Yaspo

13

object named as

Marie-Laure Yaspo

1 reference

8 September 2017

11

Hans Lehrach

1 reference

8 September 2017

Sharon Rashi-Elkeles

1

1 reference

8 September 2017

Ran Elkon

3

1 reference

8 September 2017

Ana Kupershtein

4

1 reference

8 September 2017

Yuliya Chobod

5

1 reference

8 September 2017

Arnon Paz

6

1 reference

8 September 2017

Vyacheslav Amstislavskiy

7

1 reference

8 September 2017

Marc Sultan

8

1 reference

8 September 2017

Hershel Safer

9

1 reference

8 September 2017

Wilfried Nietfeld

10

1 reference

8 September 2017

Ron Shamir

12

1 reference

8 September 2017

Yosef Shiloh

14

1 reference

8 September 2017

13 May 2014

1 reference

8 September 2017

1 reference

8 September 2017

7

1 reference

8 September 2017

325

1 reference

8 September 2017

rs3

1 reference

Instability and decay of the primary structure of DNA

8 September 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

The DNA Damage Response: Making It Safe to Play with Knives

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Recognition, signaling, and repair of DNA double-strand breaks produced by ionizing radiation in mammalian cells: the molecular choreography

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

DNA repair deficiency in neurodegeneration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Diseases associated with defective responses to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Genomic instability--an evolving hallmark of cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Genome instability and aging

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Targeting DNA damage and repair: embracing the pharmacological era for successful cancer therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Targeting the DNA damage response in oncology: past, present and future perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

DNA damage response: three levels of DNA repair regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Programmed induction of DNA double strand breaks during meiosis: setting up communication between DNA and the chromosome structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Mechanisms of programmed DNA lesions and genomic instability in the immune system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

The ATM protein kinase: regulating the cellular response to genotoxic stress, and more

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Dynamics of DNA damage response proteins at DNA breaks: a focus on protein modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Rewiring of genetic networks in response to DNA damage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Checkpoint kinases regulate a global network of transcription factors in response to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Dissection of DNA damage responses using multiconditional genetic interaction maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Unraveling DNA damage response-signaling networks through systems approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

DNA damage-induced cell death: from specific DNA lesions to the DNA damage response and apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

RNA sequencing: advances, challenges and opportunities

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

ChIP-seq: advantages and challenges of a maturing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Establishment and characterisation of a new tumorigenic cell line with a normal karyotype derived from a human breast adenocarcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

p53 target gene AEN is a nuclear exonuclease required for p53-dependent apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

ISG20L1 is a p53 family target gene that modulates genotoxic stress-induced autophagy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Upon intracellular processing, the C-terminal death domain-containing fragment of the p53-inducible PIDD/LRDD protein translocates to the nucleoli and interacts with nucleolin

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

PH domain-only protein PHLDA3 is a p53-regulated repressor of Akt

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

lincRNAs: genomics, evolution, and mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Long noncoding RNAs: cellular address codes in development and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Genome regulation by long noncoding RNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

p53 induces transcriptional and translational programs to suppress cell proliferation and growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Widespread transcription at neuronal activity-regulated enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

eRNAs are required for p53-dependent enhancer activity and gene transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

A microRNA component of the p53 tumour suppressor network

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Transcriptional activation of miR-34a contributes to p53-mediated apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

E2F7, a novel target, is up-regulated by p53 and mediates DNA damage-dependent transcriptional repression

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Critical role for antiapoptotic Bcl-xL and Mcl-1 in human macrophage survival and cellular IAP1/2 (cIAP1/2) in resistance to HIV-Vpr-induced apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Platinum-resistance in ovarian cancer cells is mediated by IL-6 secretion via the increased expression of its target cIAP-2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

A20 inhibits tumor necrosis factor (TNF) alpha-induced apoptosis by disrupting recruitment of TRADD and RIP to the TNF receptor 1 complex in Jurkat T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

A20/TNFAIP3, a new estrogen-regulated gene that confers tamoxifen resistance in breast cancer cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Histone modifications at human enhancers reflect global cell-type-specific gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

The complex language of chromatin regulation during transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Parallel induction of ATM-dependent pro- and antiapoptotic signals in response to ionizing radiation in murine lymphoid tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Functional genomics as a window on radiation stress signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

A mammalian cell cycle checkpoint pathway utilizing p53 and GADD45 is defective in ataxia-telangiectasia

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Activation of the ATM kinase by ionizing radiation and phosphorylation of p53

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Enhanced phosphorylation of p53 by ATM in response to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Eukaryotic DNA damage checkpoint activation in response to double-strand breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Distinct p53 genomic binding patterns in normal and cancer-derived human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Insights into p53 transcriptional function via genome-wide chromatin occupancy and gene expression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Deconstructing p53 transcriptional networks in tumor suppression

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

The p53 network: cellular and systemic DNA damage responses in aging and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Radiation-induced cell death mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Death through a tragedy: mitotic catastrophe

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Various modes of cell death induced by DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

If not apoptosis, then what? Treatment-induced senescence and mitotic catastrophe in tumor cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

21 January 2018

p53-based cancer therapy

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Restoring p53 function in human melanoma cells by inhibiting MDM2 and cyclin B1/CDK1-phosphorylated nuclear iASPP

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

DNA damage-dependent NF-κB activation: NEMO turns nuclear signaling inside out.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Regulation of chromatin by histone modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

p53 binding to nucleosomes within the p21 promoter in vivo leads to nucleosome loss and transcriptional activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Beyond ATM: the protein kinase landscape of the DNA damage response

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Identification and characterization of a novel and specific inhibitor of the ataxia-telangiectasia mutated kinase ATM

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

An integrated software system for analyzing ChIP-chip and ChIP-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

beadarray: R classes and methods for Illumina bead-based data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

CLICK and EXPANDER: a system for clustering and visualizing gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

Expander: from expression microarrays to networks and functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

SPIKE: a database of highly curated human signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2005032

10.1126/SCISIGNAL.2005032

21 January 2018

Identifiers

DOI

1 reference

8 September 2017

1 reference