Genome-wide mapping of autonomous promoter activity in human cells (Q36233375)

12 August 2017

Genome-wide mapping of autonomous promoter activity in human cells (English)

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12 August 2017

7

Bas van Steensel

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author name string

Joris van Arensbergen

1

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12 August 2017

Vincent D FitzPatrick

2

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12 August 2017

Marcel de Haas

3

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12 August 2017

Ludo Pagie

4

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12 August 2017

Jasper Sluimer

5

1 reference

12 August 2017

Harmen J Bussemaker

6

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12 August 2017

26 December 2016

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12 August 2017

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12 August 2017

35

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12 August 2017

2

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12 August 2017

145-153

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https://scigraph.springernature.com/pub.10.1038/nbt.3754

12 August 2017

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High-throughput functional comparison of promoter and enhancer activities

1 October 2017

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Suboptimization of developmental enhancers

1 October 2017

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Architectural and Functional Commonalities between Enhancers and Promoters

1 October 2017

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Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin

1 October 2017

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Core promoter sequence in yeast is a major determinant of expression level

1 October 2017

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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

1 October 2017

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Human promoters are intrinsically directional

1 October 2017

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1 October 2017

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Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

1 October 2017

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Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model.

1 October 2017

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Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers

1 October 2017

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1 October 2017

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A promoter-level mammalian expression atlas

1 October 2017

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1 October 2017

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Function-based identification of mammalian enhancers using site-specific integration

1 October 2017

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Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants

1 October 2017

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Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model

1 October 2017

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Perspectives on the RNA polymerase II core promoter

1 October 2017

1 reference

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Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay

1 October 2017

1 reference

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Precise maps of RNA polymerase reveal how promoters direct initiation and pausing

1 October 2017

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Genome-wide quantitative enhancer activity maps identified by STARR-seq

1 October 2017

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Complex effects of nucleotide variants in a mammalian cis-regulatory element.

1 October 2017

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1 October 2017

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The long-range interaction landscape of gene promoters

1 October 2017

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An integrated encyclopedia of DNA elements in the human genome

1 October 2017

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Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

1 October 2017

1 reference

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Fast gapped-read alignment with Bowtie 2

1 October 2017

1 reference

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Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

1 October 2017

1 reference

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Massively parallel functional dissection of mammalian enhancers in vivo

1 October 2017

1 reference

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A unique chromatin signature uncovers early developmental enhancers in humans

1 October 2017

1 reference

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Sequence features that drive human promoter function and tissue specificity

1 October 2017

1 reference

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Widespread transcription at neuronal activity-regulated enhancers

1 October 2017

1 reference

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High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis

1 October 2017

1 reference

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

1 October 2017

1 reference

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Model-based analysis of ChIP-Seq (MACS)

1 October 2017

1 reference

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A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

1 October 2017

1 reference

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The long terminal repeat (LTR) of ERV-9 human endogenous retrovirus binds to NF-Y in the assembly of an active LTR enhancer complex NF-Y/MZF1/GATA-2.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

Heme-dependent up-regulation of the alpha-globin gene expression by transcriptional repressor Bach1 in erythroid cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

The solitary long terminal repeats of ERV-9 endogenous retrovirus are conserved during primate evolution and possess enhancer activities in embryonic and hematopoietic cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

A bacterial artificial chromosome library for sequencing the complete human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

Intergenic transcription and transinduction of the human beta-globin locus

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

Inducible transcription of five globin genes in K562 human leukemia cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

DNA methylation and the frequency of CpG in animal DNA.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

CpG islands in vertebrate genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

Enhancer transcripts mark active estrogen receptor binding sites

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5498152

The beta-globin dominant control region activates homologous and heterologous promoters in a tissue-specific manner

29 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.3754

inferred from DOI database lookup

7 January 2021

based on heuristic

Structure, variation and synthesis of retrovirus long terminal repeat

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.3754

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT.3754

1 reference

12 August 2017

1 reference

12 August 2017

1 reference