Suboptimization of developmental enhancers (Q37146558)

18 August 2017

Suboptimization of developmental enhancers (English)

1 reference

18 August 2017

5

1 reference

18 August 2017

Emma K Farley

1

0 references

Wei Zhang

object named as

Wei Zhang

3

0 references

author name string

Katrina M Olson

2

1 reference

18 August 2017

Alexander J Brandt

4

1 reference

18 August 2017

Michael S Levine

6

1 reference

18 August 2017

language of work or name

English

0 references

publication date

1 October 2015

1 reference

18 August 2017

1 reference

18 August 2017

350

1 reference

18 August 2017

6258

1 reference

18 August 2017

325-328

1 reference

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Super-enhancers in the control of cell identity and disease

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

SoxB1-driven transcriptional network underlies neural-specific interpretation of morphogen signals

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Master transcription factors and mediator establish super-enhancers at key cell identity genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

The homeobox gene Otx2 in development and disease.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

DNA-binding specificities of human transcription factors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Rapid evolutionary rewiring of a structurally constrained eye enhancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Evolutionary mirages: selection on binding site composition creates the illusion of conserved grammars in Drosophila enhancers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Diversity and complexity in DNA recognition by transcription factors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

An Atomic Model of the Interferon-β Enhanceosome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Otx genes in the evolution of the vertebrate brain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

6 September 2017

Locus control regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Brinker is a sequence-specific transcriptional repressor in the Drosophila embryo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Localization of bound water in the solution structure of a complex of the erythroid transcription factor GATA-1 with DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

The S box of major histocompatibility complex class II promoters is a key determinant for recruitment of the transcriptional co-activator CIITA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Low affinity binding site clusters confer hox specificity and regulatory robustness.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

cis-regulatory logic of short-range transcriptional repression in Drosophila melanogaster

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Transcriptional regulation of a pair-rule stripe in Drosophila.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

FGF signaling establishes the anterior border of the Ciona neural tube

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Neural tube patterning by Ephrin, FGF and Notch signaling relays

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Ephrin signaling establishes asymmetric cell fates in an endomesoderm lineage of the Ciona embryo

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Control of a genetic regulatory network by a selector gene.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970741

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

3 September 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAC6948

The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAC6948

Variable control of Ets-1 DNA binding by multiple phosphates in an unstructured region

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAC6948

Analysis of the 2.0 A crystal structure of the protein-DNA complex of the human PDEF Ets domain bound to the prostate specific antigen regulatory site.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAC6948

Regulation of the transcription factor Ets-1 by DNA-mediated homo-dimerization

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAC6948

Crystal Structures of Multiple GATA Zinc Fingers Bound to DNA Reveal New Insights into DNA Recognition and Self-Association by GATA

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAC6948

Genetic variation in T-box binding element functionally affects SCN5A/SCN10A enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAC6948

FGF8/17/18 functions together with FGF9/16/20 during formation of the notochord in Ciona embryos

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26472909

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26472909

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Induction of anterior neural fates in the ascidian Ciona intestinalis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26472909

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.AAC6948

1 reference

18 August 2017

0 references

1 reference

18 August 2017

1 reference