SplicingCompass: differential splicing detection using RNA-seq data (Q34601875)

3 August 2017

SplicingCompass: differential splicing detection using RNA-seq data (English)

1 reference

3 August 2017

0 references

1 reference

5

1 reference

3 August 2017

Agnes Hotz-Wagenblatt

series ordinal

2

object named as

Agnes Hotz-Wagenblatt

1 reference

3 August 2017

3

Karl-Heinz Glatting

1 reference

3 August 2017

1

Moritz Aschoff

1 reference

3 August 2017

Matthias Fischer

4

1 reference

3 August 2017

Rainer König

series ordinal

6

1 reference

3 August 2017

language of work or name

English

0 references

publication date

28 February 2013

1 reference

3 August 2017

8

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

3 August 2017

29

1 reference

3 August 2017

1141-1148

1 reference

3 August 2017

9

1 reference

describes a project that uses

3 August 2017

1 reference

Disruption of the pelota gene causes early embryonic lethality and defects in cell cycle progression

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Differential expression analysis for sequence count data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Detecting differential usage of exons from RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Assemblies: the good, the bad, the ugly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Sex-specific and lineage-specific alternative splicing in primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

miRNA expression profiling enables risk stratification in archived and fresh neuroblastoma tumor samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Computational methods for transcriptome annotation and quantification using RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

The UCSC Genome Browser Database: 2008 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Different levels of alternative splicing among eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Insights into the connection between cancer and alternative splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Multiple links between transcription and splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Structure of the PI3K SH3 domain and analysis of the SH3 family

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Comprehensive comparative analysis of strand-specific RNA sequencing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

RNA-Seq gene expression estimation with read mapping uncertainty

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Next-generation transcriptome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Understanding alternative splicing: towards a cellular code

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Signal-dependent regulation of splicing via phosphorylation of Sam68

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Customized Oligonucleotide Microarray Gene Expression–Based Classification of Neuroblastoma Patients Outperforms Current Clinical Risk Stratification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Human RhoGAP domain-containing proteins: structure, function and evolutionary relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

SpliceAid 2: a database of human splicing factors expression data and RNA target motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Heterogeneous nuclear ribonucleoprotein K represses the production of pro-apoptotic Bcl-xS splice isoform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Identification of long-range regulatory elements in the protocadherin-alpha gene cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

CROC-1 encodes a protein which mediates transcriptional activation of the human FOS promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Cartilage acidic protein-1B (LOTUS), an endogenous Nogo receptor antagonist for axon tract formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Functions of Nogo proteins and their receptors in the nervous system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Chondrocyte secreted CRTAC1: a glycosylated extracellular matrix molecule of human articular cartilage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Aberrant and alternative splicing in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Cancer-associated regulation of alternative splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Abrogation of PIK3CA or PIK3R1 reduces proliferation, migration, and invasion in glioblastoma multiforme cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

A striking organization of a large family of human neural cadherin-like cell adhesion genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT101

10.1093/BIOINFORMATICS/BTT101

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/AschoffHGFEK13

3 August 2017

1 reference

DBLP Dataset 2021-01-02

release_6r6gpwregrbbljp5ipez5c3zpe

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/6r6gpwregrbbljp5ipez5c3zpe

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference