BMix: probabilistic modeling of occurring substitutions in PAR-CLIP data (Q30991708)

28 June 2017

BMix: probabilistic modeling of occurring substitutions in PAR-CLIP data (English)

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28 June 2017

probabilistic modeling

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3

Niko Beerenwinkel

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Monica Golumbeanu

object named as

Monica Golumbeanu

series ordinal

1

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Pejman Mohammadi

object named as

Pejman Mohammadi

series ordinal

2

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language of work or name

English

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publication date

5 September 2015

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28 June 2017

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28 June 2017

32

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28 June 2017

7

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28 June 2017

976-983

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Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes

28 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

PARma: identification of microRNA target sites in AGO-PAR-CLIP data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

The UCSC Table Browser data retrieval tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Dissecting the expression landscape of RNA-binding proteins in human cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

MOV10 and FMRP regulate AGO2 association with microRNA recognition elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

RNA Bind-n-Seq: quantitative assessment of the sequence and structural binding specificity of RNA binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein HuR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

RNA-binding proteins: modular design for efficient function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Cloning and characterization of HuR, a ubiquitously expressed Elav-like protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Argonaute proteins: functional insights and emerging roles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

How cells get the message: dynamic assembly and function of mRNA-protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

RNA stabilization by the AU-rich element binding protein, HuR, an ELAV protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Adenosine deaminases acting on RNA (ADARs) are both antiviral and proviral

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

21 January 2018

Distance between Sets

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

A census of human RNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV520

10.1093/BIOINFORMATICS/BTV520

21 January 2018

Identifiers

DOI

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journals/bioinformatics/GolumbeanuMB16

28 June 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

26342229