Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP (Q24630900)

5

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Markus Landthaler

2

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Markus Hafner

1

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Mihaela Zavolan

14

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Mathias Munschauer

object named as

Mathias Munschauer

10

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Manuel Ascano

8

object named as

Manuel Ascano

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author name string

Lukas Burger

3

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Mohsen Khorshid

4

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Philipp Berninger

6

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Andrea Rothballer

7

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Anna-Carina Jungkamp

9

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Alexander Ulrich

11

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Greg S Wardle

12

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Scott Dewell

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

13

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language of work or name

English

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publication date

2 April 2010

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published in

Cell

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volume

141

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page(s)

129-41

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issue

1

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cites work

1 reference

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Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

7 April 2017

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MicroRNAs: target recognition and regulatory functions

7 April 2017

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An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

7 April 2017

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

7 April 2017

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

7 April 2017

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Most mammalian mRNAs are conserved targets of microRNAs

7 April 2017

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A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence

7 April 2017

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Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system

7 April 2017

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The impact of microRNAs on protein output

7 April 2017

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Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

7 April 2017

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MicroRNA targeting specificity in mammals: determinants beyond seed pairing

7 April 2017

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A mammalian microRNA expression atlas based on small RNA library sequencing

7 April 2017

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PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny

7 April 2017

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A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain

7 April 2017

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The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR

7 April 2017

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 April 2017

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Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes

7 April 2017

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Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex

7 April 2017

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Modular recognition of RNA by a human pumilio-homology domain

7 April 2017

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Widespread changes in protein synthesis induced by microRNAs

7 April 2017

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Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

7 April 2017

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

7 April 2017

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Regulation of translation initiation in eukaryotes: mechanisms and biological targets

7 April 2017

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MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation

7 April 2017

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MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation

7 April 2017

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Identification of let-7-regulated oncofetal genes

7 April 2017

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RNA-binding proteins: modular design for efficient function

7 April 2017

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VICKZ proteins: a multi-talented family of regulatory RNA-binding proteins

7 April 2017

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CLIP identifies Nova-regulated RNA networks in the brain

7 April 2017

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Characterization of Heterogeneous Nuclear RNA-Protein Complexes In Vivo with Monoclonal Antibodies

7 April 2017

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Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels

7 April 2017

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Pre-mRNA processing reaches back to transcription and ahead to translation

7 April 2017

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RNA regulons: coordination of post-transcriptional events

7 April 2017

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Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5' UTR as in the 3' UTR

7 April 2017

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microRNA target predictions in animals

7 April 2017

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

7 April 2017

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A PUF family portrait: 3'UTR regulation as a way of life

7 April 2017

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Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets

26 May 2017

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Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

27 September 2017

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mRNA localization: gene expression in the spatial dimension

27 September 2017

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Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs

27 September 2017

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Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs

27 September 2017

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New implications for the QUAKING RNA binding protein in human disease

27 September 2017

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Inference of miRNA targets using evolutionary conservation and pathway analysis

27 September 2017

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Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

27 September 2017

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Target RNA motif and target mRNAs of the Quaking STAR protein

27 September 2017

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Identification of a target RNA motif for RNA-binding protein HuR.

27 September 2017

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Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

27 September 2017

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Structure of nuclear ribonucleoprotein: identification of proteins in contact with poly(A)+ heterogeneous nuclear RNA in living HeLa cells

27 September 2017

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Ultraviolet light-induced crosslinking of mRNA to proteins

27 September 2017

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Photocross-linking of nucleic acids to associated proteins

27 September 2017

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Isolation of microRNA targets by miRNP immunopurification

27 September 2017

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4-Thiouridine photosensitized RNA-protein crosslinking in mammalian cells

30 May 2018

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Site-specific crosslinking of human microRNPs to RNA targets

30 May 2018

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Cross-linking of mRNA to proteins by irradiation of intact cells with ultraviolet light

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A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

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Expression of oncofetal RNA-binding protein CRD-BP/IMP1 predicts clinical outcome in colon cancer

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Identifiers

DOI

1 reference

508027

508027

1 reference

1 reference

1 reference