From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome (Q29541839)

22 April 2017

Maria W. Górna

1

1 reference

ORCID Public Data File 2021

Ben Luisi

series ordinal

3

object named as

Ben F. Luisi

1 reference

22 April 2017

author name string

Agamemnon J. Carpousis

series ordinal

2

1 reference

22 April 2017

language of work or name

1 reference

14 December 2011

1 reference

Quarterly Reviews of Biophysics

22 April 2017

published in

1 reference

22 April 2017

volume

45

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22 April 2017

issue

02

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22 April 2017

page(s)

105-145

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Ribonuclease P: unity and diversity in a tRNA processing ribozyme

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21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Translocation and unwinding mechanisms of RNA and DNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Degradation of ribosomal RNA during starvation: comparison to quality control during steady-state growth and a role for RNase PH

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

A protein complex mediating mRNA degradation in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

SrmB, a DEAD-box helicase involved in Escherichia coli ribosome assembly, is specifically targeted to 23S rRNA in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Small noncoding RNAs controlling pathogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Stability effects of mutations and protein evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Self-assembly of the bacterial cytoskeleton-associated RNA helicase B protein into polymeric filamentous structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Lipid spirals in Bacillus subtilis and their role in cell division.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Hfq structure, function and ligand binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Small RNAs controlling outer membrane porins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

The native 3D organization of bacterial polysomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Characterization of components of the Staphylococcus aureus mRNA degradosome holoenzyme-like complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

The structural and functional diversity of metabolite-binding riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Decapping is preceded by 3' uridylation in a novel pathway of bulk mRNA turnover

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Protein-protein interaction through beta-strand addition

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

The role of 3'-5' exoribonucleases in RNA degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Proteins that interact with bacterial small RNA regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Polynucleotide phosphorylase activity may be modulated by metabolites in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Translation-independent localization of mRNA in E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Spatial organization of the flow of genetic information in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Location of the RNA-processing enzymes RNase III, RNase E and RNase P in the Escherichia coli cell.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Proteins associated with RNase E in a multicomponent ribonucleolytic complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Site-specific RNase E cleavage of oligonucleotides and inhibition by stem-loops

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Small RNAs controlling iron metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

The RNA degradosome: life in the fast lane of adaptive molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Bacterial small RNA regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Ribonuclease E is a 5'-end-dependent endonuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Sensing of 5' monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

An mRNA degrading complex in Rhodobacter capsulatus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

DEAD-box RNA helicases in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Inferring function using patterns of native disorder in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double-stranded RNA independent of the degradosome-assembling region of RNase E.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

The multienzyme architecture of eukaryotic fatty acid synthases

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Co-translational mRNA decay in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Riboswitch RNAs: using RNA to sense cellular metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Translation initiation factor a/eIF2(-gamma) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

An RNA degradosome assembly in Caulobacter crescentus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Topology of the global regulatory network of carbon limitation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Transcriptional and post-transcriptional control of cold-shock genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Messenger RNA stability and its role in control of gene expression in bacteria and phages

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Mycobacterial RNase E-associated proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Rapid cleavage of RNA by RNase E in the absence of 5' monophosphate stimulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Cell regulation: determined to signal discrete cooperation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

(p)ppGpp inhibits polynucleotide phosphorylase from streptomyces but not from Escherichia coli and increases the stability of bulk mRNA in Streptomyces coelicolor

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Roles of the 5'-phosphate sensor domain in RNase E.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Origins and activities of the eukaryotic exosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Functional analysis of 11 putative essential genes in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Stabilization of circular rpsT mRNA demonstrates the 5'-end dependence of RNase E action in vivo

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Transcript stability in the protein interaction network of Escherichia coli

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

A tale of two mRNA degradation pathways mediated by RNase E.

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Polyphosphate kinase is a component of the Escherichia coli RNA degradosome

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E 1 1Edited by I. B. Holland

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Polyadenylated, noncapped RNA from the archaebacterium Methanococcus vannielii

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Ribosome assembly in Escherichia coli strains lacking the RNA helicase DeaD/CsdA or DbpA

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

Transcription and translation are coupled in Archaea

1 reference

https://api.crossref.org/works/10.1017%2FS003358351100014X

7 January 2021

10.1017/S003358351100014X

Identifiers

DOI

2 references

22 April 2017

Consolidated OpenCitations Corpus – April 2017

3409968

3409968

1 reference

Consolidated OpenCitations Corpus – April 2017

Consolidated OpenCitations Corpus – April 2017

1 reference