Nucleosome distortion as a possible mechanism of transcription activation domain function (Q28074780)

Alexandre M. Erkine

series ordinal

2

1 reference

language of work or name

1 reference

20 September 2016

1 reference

published in

Epigenetics & Chromatin

1 reference

volume

9

1 reference

page(s)

40

1 reference

https://scigraph.springernature.com/pub.10.1186/s13072-016-0092-2

issue

1

0 references

exact match

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cites work

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Analysis of the RelA:CBP/p300 Interaction Reveals Its Involvement in NF-κB-Driven Transcription

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Targeting Activity Is Required for SWI/SNF Function In Vivo and Is Accomplished through Two Partially Redundant Activator-Interaction Domains

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Transcriptional transactivation by selected short random peptides attached to lexA-GFP fusion proteins

20 March 2017

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Transcriptional activation domains of human heat shock factor 1 recruit human SWI/SNF

20 March 2017

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Recruitment of HAT complexes by direct activator interactions with the ATM-related Tra1 subunit

20 March 2017

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20 March 2017

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Two distinct nucleosome alterations characterize chromatin remodeling at the Saccharomyces cerevisiae ADH2 promoter

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Ligand-dependent transcription activation by nuclear receptors requires the DRIP complex

20 March 2017

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Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks

20 March 2017

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A transcriptional activating region with two contrasting modes of protein interaction

20 March 2017

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An activator target in the RNA polymerase II holoenzyme

20 March 2017

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Solution Structure of the KIX Domain of CBP Bound to the Transactivation Domain of CREB: A Model for Activator:Coactivator Interactions

20 March 2017

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Role of the Ada adaptor complex in gene activation by the glucocorticoid receptor

29 September 2017

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Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain

20 March 2017

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CTF5--a new transcriptional activator of the NFI/CTF family

20 March 2017

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Transcription factor IIA mutations show activator-specific defects and reveal a IIA function distinct from stimulation of TBP-DNA binding

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Pattern of aromatic and hydrophobic amino acids critical for one of two subdomains of the VP16 transcriptional activator

20 March 2017

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A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II.

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Binding of basal transcription factor TFIIH to the acidic activation domains of VP16 and p53

20 March 2017

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The transcriptional activator GCN4 contains multiple activation domains that are critically dependent on hydrophobic amino acids

20 March 2017

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The TBP-TFIIA interaction in the response to acidic activators in vivo

20 March 2017

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Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins

20 March 2017

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Molecular recognition of DNA by small molecules

20 March 2017

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Nine-amino-acid transactivation domain: establishment and prediction utilities

20 March 2017

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Yeast mediator and its role in transcriptional regulation

20 March 2017

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Dynamic regulation of pol II transcription by the mammalian Mediator complex

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

SAGA is an essential in vivo target of the yeast acidic activator Gal4p

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Induced alpha helix in the VP16 activation domain upon binding to a human TAF

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

p53 transcriptional activation mediated by coactivators TAFII40 and TAFII60

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Interaction studies of the human and Arabidopsis thaliana Med25-ACID proteins with the herpes simplex virus VP16- and plant-specific Dreb2a transcription factors

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Involvement of the TRAP220 component of the TRAP/SMCC coactivator complex in embryonic development and thyroid hormone action

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Transcriptional activation by recruitment

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Alteration of nucleosome structure as a mechanism of transcriptional regulation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

An RNA polymerase II holoenzyme responsive to activators

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

A new class of yeast transcriptional activators

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

The multifaceted roles of intrinsic disorder in protein complexes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Artificial zinc finger DNA binding domains: versatile tools for genome engineering and modulation of gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Controlling gene networks and cell fate with precision-targeted DNA-binding proteins and small-molecule-based genome readers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

A sequence-specific transcription activator motif and powerful synthetic variants that bind Mediator using a fuzzy protein interface

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Using targeted chromatin regulators to engineer combinatorial and spatial transcriptional regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Intrinsically disordered proteins and intrinsically disordered protein regions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Interaction between transactivation domain of p53 and middle part of TBP-like protein (TLP) is involved in TLP-stimulated and p53-activated transcription from the p21 upstream promoter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Intrinsically disordered proteins: a 10-year recap

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

PaxDb, a database of protein abundance averages across all three domains of life

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

TBP binding-induced folding of the glucocorticoid receptor AF1 domain facilitates its interaction with steroid receptor coactivator-1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Small-molecule regulators that mimic transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Tra1 as a screening target for transcriptional activation domain discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

A TAD further: exogenous control of gene activation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Intrinsic disorder in transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Structural properties of the promiscuous VP16 activation domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

RNA sequences that work as transcriptional activating regions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Dynamic chromatin alterations triggered by natural and synthetic activation domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Modular design of artificial transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Aromatic interactions in model systems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Transcriptional activating regions target a cyclin-dependent kinase.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Recognition of specific DNA sequences.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Promoter targeting of chromatin-modifying complexes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Chromatin remodeling enzymes: who's on first?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Activator-dependent transcription from chromatin in vitro involving targeted histone acetylation by p300.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

HATs off: selective synthetic inhibitors of the histone acetyltransferases p300 and PCAF.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Transcriptional regulation through Mediator-like coactivators in yeast and metazoan cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Activation of gene expression by small molecule transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Conservation of glutamine-rich transactivation function between yeast and humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

An artificial transcriptional activating region with unusual properties

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Activation mutants in yeast RNA polymerase II subunit RPB3 provide evidence for a structurally conserved surface required for activation in eukaryotes and bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Fusions with histone H3 result in highly specific alteration of gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Mediator protein mutations that selectively abolish activated transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

A nonnatural transcriptional coactivator

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Quantitation of putative activator-target affinities predicts transcriptional activating potentials

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

A proline-rich TGF-beta-responsive transcriptional activator interacts with histone H3.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Transcriptional activation by CTF proteins is mediated by a bipartite low-proline domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

TBP-TAF complexes: selectivity factors for eukaryotic transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

A eukaryotic transcriptional activator bearing the DNA specificity of a prokaryotic repressor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Transcription factor ATF interacts with the TATA factor to facilitate establishment of a preinitiation complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Plant homeodomain-leucine zipper I transcription factors exhibit different functional AHA motifs that selectively interact with TBP or/and TFIIB.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Domains of Tra1 important for activator recruitment and transcription coactivator functions of SAGA and NuA4 complexes.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Amphipathic small molecules mimic the binding mode and function of endogenous transcription factors

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

TBP-associated factors are not generally required for transcriptional activation in yeast

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Transcriptional activation modulated by homopolymeric glutamine and proline stretches

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

Mutational analysis of the transcription activation domain of RelA: identification of a highly synergistic minimal acidic activation module

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029090

The transcriptional activation domain of the plant-specific Dof1 factor functions in plant, animal, and yeast cells

2 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Transcription activation in cells lacking TAFIIS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Chromatin remodeling by transcriptional activation domains in a yeast episome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Mechanism of transcription factor recruitment by acidic activators.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Cdk1 Triggers Association of RNA Polymerase to Cell Cycle Promoters Only after Recruitment of the Mediator by SBF

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Characterization of Physical Interactions of the Putative Transcriptional Adaptor, ADA2, with Acidic Activation Domains and TATA-binding Protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Yeast activators stimulate plant gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Transcription in yeast activated by a putative amphipathic α helix linked to a DNA binding unit

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFIID

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Binding of general transcription factor TFIIB to an acidic activating region

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Eukaryotic activators function during multiple steps of preinitiation complex assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Acid blobs and negative noodles

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13072-016-0092-2

Transcriptional up-regulation in cells mediated by a small molecule

21 January 2018

1 reference

12 December 2020

Critical structural elements of the VP16 transcriptional activation domain

1 reference

12 December 2020

Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation

1 reference

12 December 2020

Evidence that Gal11 protein is a target of the Gal4 activation domain in the mediator

1 reference

12 December 2020

Activation domain-mediated targeting of the SWI/SNF complex to promoters stimulates transcription from nucleosome arrays

1 reference

12 December 2020

A small molecule transcriptional activation domain

1 reference

12 December 2020

How transcriptional activators bind target proteins

1 reference

12 December 2020

10.1186/S13072-016-0092-2

Identifiers

DOI

1 reference

Dimensions Publication ID

3439267

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s13072-016-0092-2

3439267

1 reference

1 reference

1 reference