PaxDb, a database of protein abundance averages across all three domains of life (Q36144185)

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30 January 2020

title

PaxDb, a database of protein abundance averages across all three domains of life (English)

1 reference

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30 January 2020

0 references

Michael Otmar Hengartner

6

1 reference

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30 January 2020

Christian von Mering

7

1 reference

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30 January 2020

author name string

M Wang

1

1 reference

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30 January 2020

M Weiss

2

1 reference

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30 January 2020

M Simonovic

3

1 reference

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30 January 2020

G Haertinger

4

1 reference

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30 January 2020

S P Schrimpf

5

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30 January 2020

publication date

24 April 2012

1 reference

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Molecular & Cellular Proteomics

30 January 2020

published in

1 reference

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30 January 2020

volume

11

1 reference

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30 January 2020

page(s)

492-500

1 reference

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30 January 2020

issue

8

1 reference

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Uberon, an integrative multi-species anatomy ontology

30 January 2020

cites work

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2 October 2017

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Enabling technologies for yeast proteome analysis

2 October 2017

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A tissue-specific atlas of mouse protein phosphorylation and expression

2 October 2017

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On the development of plasma protein biomarkers

2 October 2017

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Data standardization by the HUPO-PSI: how has the community benefitted?

2 October 2017

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Tranche distributed repository and ProteomeCommons.org

2 October 2017

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2 October 2017

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OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011

2 October 2017

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Mass spectrometry at the interface of proteomics and genomics

2 October 2017

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Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

2 October 2017

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Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

2 October 2017

1 reference

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Proteogenomics to discover the full coding content of genomes: a computational perspective

2 October 2017

1 reference

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Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research

2 October 2017

1 reference

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Proteome-wide protein concentrations in the human heart.

2 October 2017

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Single cell analysis: the new frontier in 'omics'.

2 October 2017

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An evolutionarily conserved mechanism for controlling the efficiency of protein translation

2 October 2017

1 reference

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Forces that influence the evolution of codon bias

2 October 2017

1 reference

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Shotgun proteomics data from multiple organisms reveals remarkable quantitative conservation of the eukaryotic core proteome

2 October 2017

1 reference

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2 October 2017

The PeptideAtlas Project

1 reference

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Proteome organization in a genome-reduced bacterium

2 October 2017

1 reference

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Peptide and protein quantification: a map of the minefield.

2 October 2017

1 reference

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The Proteomics Identifications database: 2010 update

2 October 2017

1 reference

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eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Quantitative proteomic analysis of single pancreatic islets

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

2 October 2017

1 reference

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Environmental proteomics: a paradigm shift in characterizing microbial activities at the molecular level.

2 October 2017

1 reference

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Systems biology: Functional analysis of natural microbial consortia using community proteomics

2 October 2017

1 reference

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Discovery and revision of Arabidopsis genes by proteogenomics

2 October 2017

1 reference

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The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results

2 October 2017

1 reference

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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

2 October 2017

1 reference

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High quality catalog of proteotypic peptides from human heart

2 October 2017

1 reference

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Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

2 October 2017

1 reference

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PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

The transcriptional landscape of the yeast genome defined by RNA sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Determinants of protein abundance and translation efficiency in S. cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

A high-quality catalog of the Drosophila melanogaster proteome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Why highly expressed proteins evolve slowly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Open source system for analyzing, validating, and storing protein identification data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412977

Global analysis of protein expression in yeast

2 October 2017

1 reference

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The COG database: an updated version includes eukaryotes

2 October 2017

1 reference

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Selection for short introns in highly expressed genes

2 October 2017

1 reference

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Metazoan operons accelerate recovery from growth-arrested states

2 October 2017

1 reference

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Mass spectrometry in high-throughput proteomics: ready for the big time.

2 July 2018

1 reference

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Proteomic analysis of proteins involved in spermiogenesis in mouse

23 September 2018

1 reference

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SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

23 September 2018

1 reference

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Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

23 September 2018

1 reference

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A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies.

23 September 2018

1 reference

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Ongoing and future developments at the Universal Protein Resource

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.O111.014704

Costly Mistakes: Translational Infidelity and Protein Homeostasis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.O111.014704

Proteomic analysis of lung tissues from patients with pulmonary arterial hypertension

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22535208

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.O111.014704

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22535208%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22535208%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

1 reference