DNA intercalation without flipping in the specific ThaI-DNA complex (Q27664636)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20861000%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

title

DNA intercalation without flipping in the specific ThaI-DNA complex (English)

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14 February 2020

1

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14 February 2020

Marek Wojciechowski

series ordinal

2

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14 February 2020

Matthias Bochtler

series ordinal

4

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14 February 2020

author name string

Honorata Czapinska

series ordinal

3

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14 February 2020

language of work or name

English

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publication date

21 September 2010

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14 February 2020

published in

Nucleic Acids Research

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14 February 2020

volume

39

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14 February 2020

page(s)

744-754

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14 February 2020

issue

2

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Creative Commons Attribution-NonCommercial 2.5 Generic

14 February 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme

20 March 2017

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Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII

20 March 2017

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Crystal structure of the -Me type II restriction endonuclease Hpy99I with target DNA

20 March 2017

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The structure of Sox17 bound to DNA reveals a conserved bending topology but selective protein interaction platforms

20 March 2017

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Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex

20 March 2017

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Early Interrogation and Recognition of DNA Sequence by Indirect Readout

20 March 2017

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DNA Distortion and Specificity in a Sequence-Specific Endonuclease

20 March 2017

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Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA

20 March 2017

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Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding

20 March 2017

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Recognition of DNA damage by the Rad4 nucleotide excision repair protein

20 March 2017

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Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA

20 March 2017

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Topology of Type II REases revisited; structural classes and the common conserved core

20 March 2017

1 reference

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Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically

20 March 2017

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Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb

20 March 2017

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DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion

20 March 2017

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Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase

20 March 2017

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Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers

20 March 2017

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Flexible DNA bending in HU-DNA cocrystal structures

20 March 2017

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The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding

20 March 2017

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Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation

20 March 2017

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Structure and function of type II restriction endonucleases

20 March 2017

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Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement

20 March 2017

1 reference

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The crystal structure of DNA mismatch repair protein MutS binding to a G x T mismatch

20 March 2017

1 reference

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Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA

20 March 2017

1 reference

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The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum

20 March 2017

1 reference

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Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA

20 March 2017

1 reference

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Crystal structure of NaeI--an evolutionary bridge between DNA endonuclease and topoisomerase

20 March 2017

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Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution

20 March 2017

1 reference

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Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex

20 March 2017

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A novel endonuclease mechanism directly visualized for I-PpoI

20 March 2017

1 reference

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Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonuclease

20 March 2017

1 reference

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Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases

20 March 2017

1 reference

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Role of protein-induced bending in the specificity of DNA recognition: crystal structure of EcoRV endonuclease complexed with d(AAAGAT) + d(ATCTT)

20 March 2017

1 reference

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The hyperthermophile chromosomal protein Sac7d sharply kinks DNA

20 March 2017

1 reference

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Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions

20 March 2017

1 reference

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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

20 March 2017

1 reference

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A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

20 March 2017

1 reference

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The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments

20 March 2017

1 reference

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Co-crystal structure of TBP recognizing the minor groove of a TATA element

20 March 2017

1 reference

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Crystal structure of a yeast TBP/TATA-box complex

20 March 2017

1 reference

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HhaI methyltransferase flips its target base out of the DNA helix

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Structure of PvuII endonuclease with cognate DNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices

20 March 2017

1 reference

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Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex

20 March 2017

1 reference

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Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding

20 March 2017

1 reference

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Dali server: conservation mapping in 3D

20 March 2017

1 reference

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Features and development of Coot

20 March 2017

1 reference

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Version 1.2 of the Crystallography and NMR system

20 March 2017

1 reference

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Refinement of macromolecular structures by the maximum-likelihood method

20 March 2017

1 reference

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20 March 2017

1 reference

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ARP/wARP and automatic interpretation of protein electron density maps

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Structural insights into the first incision reaction during nucleotide excision repair

20 March 2017

1 reference

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An equivalent metal ion in one- and two-metal-ion catalysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Central base pair flipping and discrimination by PspGI.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Structure of a DNA glycosylase searching for lesions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Catalytic mechanisms of restriction and homing endonucleases

29 September 2017

1 reference

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Structure-based redesign of the catalytic/metal binding site of Cfr10I restriction endonuclease reveals importance of spatial rather than sequence conservation of active centre residues

29 September 2017

1 reference

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Intercalation, DNA kinking, and the control of transcription.

29 September 2017

1 reference

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Probing the indirect readout of the restriction enzyme EcoRV. Mutational analysis of contacts to the DNA backbone

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Methylation of either cytosine in the recognition sequence CGCG inhibits ThaI cleavage of DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

A restriction enzyme Tha I from the thermophilic mycoplasma Thermoplasma acidophilum

29 September 2017

1 reference

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DIBER: protein, DNA or both?

29 September 2017

1 reference

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Nucleophile activation in PD...(D/E)xK metallonucleases: an experimental and computational pK(a) study

2 June 2018

1 reference

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3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures

2 June 2018

1 reference

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Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease.

2 June 2018

1 reference

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Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles

2 June 2018

1 reference

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On the Divalent Metal Ion Dependence of DNA Cleavage by Restriction Endonucleases of the EcoRI Family

2 June 2018

1 reference

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Catalytic mechanism of DNA backbone cleavage by the restriction enzyme EcoRV: a quantum mechanical/molecular mechanical analysis

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

Crystal structures of type II restriction endonuclease EcoO109I and its complex with cognate DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025569

An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site

27 November 2018

1 reference

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Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs

27 November 2018

1 reference

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Metal-binding sites at the active site of restriction endonuclease BamHI can conform to a one-ion mechanism

27 November 2018

1 reference

12 December 2020

Five-stranded beta-sheet sandwiched with two alpha-helices: a structural link between restriction endonucleases EcoRI and EcoRV

1 reference

12 December 2020

A sliding restriction enzyme pauses

1 reference

12 December 2020

Alteration of sequence specificity of the type II restriction endonuclease HincII through an indirect readout mechanism

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ834

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20861000%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/FirczukWCB11

14 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20861000%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference