DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion (Q24538026)

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author name string

Xing Zhang

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Robert Maunus

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Zhe Yang

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Geoffrey G Wilson

5

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Xiaodong Cheng

Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI.

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language of work or name

English

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publication date

2006

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published in

Nucleic Acids Research

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volume

34

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issue

3

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page(s)

939-48

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cites work

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Crystal structure of the Escherichia coli dcm very-short-patch DNA repair endonuclease bound to its reaction product-site in a DNA superhelix

24 March 2017

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Structure and function of type II restriction endonucleases

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2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferases

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Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation

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The crystal structure of DNA mismatch repair protein MutS binding to a G x T mismatch

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Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA

24 March 2017

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Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex

24 March 2017

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HhaI methyltransferase flips its target base out of the DNA helix

24 March 2017

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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24 March 2017

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Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases

24 March 2017

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Rev1 employs a novel mechanism of DNA synthesis using a protein template

24 March 2017

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Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis

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7 April 2017

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Dynamic evidence for metal ion catalysis in the reaction mediated by a flap endonuclease.

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AdoMet-dependent methylation, DNA methyltransferases and base flipping

27 September 2017

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Molecular enzymology of the EcoRV DNA-(Adenine-N (6))-methyltransferase: kinetics of DNA binding and bending, kinetic mechanism and linear diffusion of the enzyme on DNA.

27 September 2017

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Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence

27 September 2017

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2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects

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Direct real time observation of base flipping by the EcoRI DNA methyltransferase

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Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes

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Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives.

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27 September 2017

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Targeted base stacking disruption by the EcoRI DNA methyltransferase

30 May 2018

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MutH complexed with hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage

30 May 2018

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An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site

29 November 2018

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Stopped-flow and mutational analysis of base flipping by the Escherichia coli Dam DNA-(adenine-N6)-methyltransferase

29 November 2018

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Flipping duplex DNA inside out: a double base-flipping reaction mechanism by Escherichia coli MutY adenine glycosylase

29 November 2018

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29 November 2018

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Restriction endonucleases from three strains of Haemophilus influenzae

29 November 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/16473850

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

[34] Rotation function calculations with GLRF program

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16473850

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKJ484

1 reference

3599785

3599785

1 reference

1 reference

1 reference