Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products (Q26751270)

26 June 2017

2 references

19 September 2019

4 November 2019

Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products (English)

1 reference

biomedical investigative technique

26 June 2017

1 reference

19 September 2019

1 reference

4 November 2019

whole genome sequencing

1 reference

Arne Holst-Jensen

1

1 reference

26 June 2017

Bjørn Spilsberg

2

1 reference

26 June 2017

Alfred J Arulandhu

3

1 reference

26 June 2017

Esther Kok

4

1 reference

26 June 2017

Jianxin Shi

5

1 reference

26 June 2017

Jana Zel

6

1 reference

26 June 2017

language of work or name

English

0 references

publication date

21 April 2016

1 reference

Analytical and Bioanalytical Chemistry

26 June 2017

1 July 2016

2 references

19 September 2019

4 November 2019

3 references

26 June 2017

19 September 2019

4 November 2019

408

1 reference

26 June 2017

4595-4614

1 reference

26 June 2017

17

1 reference

Creative Commons Attribution 4.0 International

26 June 2017

2 references

19 September 2019

describes a project that uses

4 November 2019

copyright status

copyrighted

0 references

DESeq2

object named as

R package DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1007/s00216-016-9549-1

0 references

cites work

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A physical, genetic and functional sequence assembly of the barley genome

7 April 2017

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DELLY: structural variant discovery by integrated paired-end and split-read analysis

7 April 2017

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A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

7 April 2017

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Differential expression analysis for sequence count data

7 April 2017

1 reference

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Genome sequence of the palaeopolyploid soybean

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The B73 Maize Genome: Complexity, Diversity, and Dynamics

7 April 2017

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

7 April 2017

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

GMDD: a database of GMO detection methods

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Initial sequencing and comparative analysis of the mouse genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

BLAT—The BLAST-Like Alignment Tool

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

7 April 2017

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Initial sequencing and analysis of the human genome

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

DNA sequencing with chain-terminating inhibitors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Genomic resources in mungbean for future breeding programs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Identification of the genomic insertion site of Pmel-1 TCR α and β transgenes by next-generation sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Fast gapped-read alignment with Bowtie 2

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The Sequence Alignment/Map format and SAMtools

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Real-time quantitative polymerase chain reaction methods for four genetically modified maize varieties and maize DNA content in food

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Fast and accurate long-read alignment with Burrows-Wheeler transform

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

ABySS: a parallel assembler for short read sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

CRISPR-Cas systems for editing, regulating and targeting genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Scaffolding pre-assembled contigs using SSPACE

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

A whole-genome assembly of the domestic cow, Bos taurus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The map-based sequence of the rice genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Molecular Characterization of Transgenic Events Using Next Generation Sequencing Approach

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Use of next generation sequencing data to develop a qPCR method for specific detection of EU-unauthorized genetically modified Bacillus subtilis overproducing riboflavin

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Tracking crop varieties using genotyping-by-sequencing markers: a case study using cassava (Manihot esculenta Crantz).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The genome of cultivated sweet potato contains Agrobacterium T-DNAs with expressed genes: An example of a naturally transgenic food crop.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Genome Sequence of EU-Unauthorized Genetically Modified Bacillus subtilis Strain 2014-3557 Overproducing Riboflavin, Isolated from a Vitamin B2 80% Feed Additive

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

A high-throughput screening strategy for detecting CRISPR-Cas9 induced mutations using next-generation sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

GMOseek: a user friendly tool for optimized GMO testing.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The sheep genome illuminates biology of the rumen and lipid metabolism

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Discovery of transgene insertion sites by high throughput sequencing of mate pair libraries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The 3,000 rice genomes project: new opportunities and challenges for future rice research

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

DNA-binding specificities of plant transcription factors and their potential to define target genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Identification and validation of promoters and cis-acting regulatory elements

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Do transgenesis and marker-assisted backcross breeding produce substantially equivalent plants? A comparative study of transgenic and backcross rice carrying bacterial blight resistant gene Xa21.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Characterization of GM events by insert knowledge adapted re-sequencing approaches

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The GMOseek matrix: a decision support tool for optimizing the detection of genetically modified plants.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Time- and cost-efficient identification of T-DNA insertion sites through targeted genomic sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Site-directed nucleases: a paradigm shift in predictable, knowledge-based plant breeding.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Use of microarray hybrid capture and next-generation sequencing to identify the anatomy of a transgene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Molecular characterization of transgene integration by next-generation sequencing in transgenic cattle

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Detecting un-authorized genetically modified organisms (GMOs) and derived materials.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Recent progress in the understanding of tissue culture-induced genome level changes in plants and potential applications

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Molecular profiling--a tool for addressing emerging gaps in the comparative risk assessment of GMOs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Structure of the natural transgene PgiC2 in the common grass Festuca ovina

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

A window into third-generation sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Characterization of unknown genetic modifications using high throughput sequencing and computational subtraction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

The TIGR Rice Genome Annotation Resource: improvements and new features

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909802

Deployment of new biotechnologies in plant breeding

28 September 2017

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

Practical experiences with an extended screening strategy for genetically modified organisms (GMOs) in real-life samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

A practical approach to screen for authorised and unauthorised genetically modified plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

Repeat-induced gene silencing in mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

Bioinformatic tools for using whole genome sequencing as a rapid high resolution diagnostic typing tool when tracing bioterror organisms in the food and feed chain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

Assembling millions of short DNA sequences using SSAKE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

Guidance on the environmental risk assessment of genetically modified plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

Guidance for risk assessment of food and feed from genetically modified plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

Inter-laboratory Testing of GMO Detection by Combinatory SYBR®Green PCR Screening (CoSYPS)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

inferred from DOI database lookup

7 January 2021

based on heuristic

Southern-by-Sequencing: A Robust Screening Approach for Molecular Characterization of Genetically Modified Crops

1 reference

https://api.crossref.org/works/10.1007%2FS00216-016-9549-1

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1007/S00216-016-9549-1

1 reference

Dimensions Publication ID

26 June 2017

1007662900

0 references

OpenCitations bibliographic resource ID

2176929

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference