Wikidata:WikiProject Medicine/Schemas

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About[edit]

This page collects information about medicine-related Shape Expressions (Q29377880) (ShEx) and their use in EntitySchemas on Wikidata.

List of Shape Expressions[edit]

Theoretically useful[edit]

  • patient
  • symptom
  • physician
  • nurse
  • electronic health record
  • diagnostic technique
  • diagnosis
  • medical condition
  • disease
  • pathogen
  • treatment
  • pharmaceutical drug
  • medical procedure
  • hospital
  • clinical trial
  • patient data
  • anatomical entity
  • physiological process
  • pathological process
  • medical specialty
  • ethics committee
  • epidemic
  • health
  • public health
  • medical journal
  • medical society
  • more

Available schemas[edit]

General[edit]

Medical schemas[edit]

  • EntitySchema:E69 disease - basic schema for a human disease according to the disease ontology
  • EntitySchema:E72 pharmaceutical drug - basic schema of a pharmaceutical drug
  • EntitySchema:E88 health in region - basic scheme for health by region/country items
  • EntitySchema:E113 Gene Wiki disease terms - schema for items sourced from the Disease Ontology
  • EntitySchema:E137 privacy policy - this item has a privacy policy URL
  • EntitySchema:E173 outbreak - Entity schema for outbreak in specific locations
  • EntitySchema:E184 pandemic - entity schema of a pandemic
  • EntitySchema:E187 hospital - entity schema of hospital
  • EntitySchema:E188 2020 coronavirus pandemic local outbreaks - entity schema of 2020 coronavirus pandemic local outbreaks
  • EntitySchema:E189 clinical trial - Entity Schema for a clinical trial
  • EntitySchema:E195 COVID-19 contact tracing app - Entity schema of COVID-19 contact tracing app
  • EntitySchema:E196 covid-19 death - entity schema of a covid-19 related death
  • EntitySchema:E210 hospital (Malayalam) - entity schema of hospital (Malayalam)
  • EntitySchema:E211 hospital - schema for hospitals
  • EntitySchema:E323 Gene Wiki bot for the Disease Ontology - Disease Ontology on Wikidata as monitored and maintained by Gene Wiki bots
  • EntitySchema:E344 gene-disease associations - shape patterns on how gene-disease associations are modelled in Wikidata
  • EntitySchema:E351 pharmaceutical product - A therapeutical product, usually containing one or more types of compounds as active ingredients
  • EntitySchema:E396 ethics committee - schema for an ethics committee, institutional review board or institutional animal care and use committee
  • EntitySchema:E397 anatomical structure - schema for an anatomical structure

Common use cases for Shape Expressions[edit]

  • Standardization
  • Quality control
  • Subsetting

Issues with Entity Schemas[edit]

Issues with existing Entity Schemas[edit]

Conceptual issues[edit]

Multiple Entity Schemas for the same or closely related concepts[edit]
Dependencies of Entity Schemas[edit]

Practical issues[edit]

Findability[edit]
Testing[edit]
  • Sandboxes
Scalability[edit]
  • How to use one Shape Expression across a large graph?
  • How to use multiple Shape Expressions together?
    • How to standardize the declaration of dependencies?

Issues with missing Entity Schemas[edit]

  • Any modelling standards to follow?
  • What should go into Wikidata or elsewhere?

See also[edit]