A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences. (Q51936782)

17 April 2018

title

A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences. (English)

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17 April 2018

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Xun Gu

1

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17 April 2018

publication date

24 July 2006

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Molecular Biology and Evolution

published in

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volume

23

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issue

10

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page(s)

1937-1945

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Solving the protein sequence metric problem

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Phylogenomics: intersection of evolution and genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

SplitTester: software to identify domains responsible for functional divergence in protein family

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Predicting functional divergence in protein evolution by site-specific rate shifts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

The structural basis of molecular adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Maximum-likelihood approach for gene family evolution under functional divergence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Functional divergence in protein (family) sequence evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

The rapid generation of mutation data matrices from protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Sequence and structural aspects of functional diversification in class I alpha-mannosidase evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Simplicial edge representation of protein structures and alpha contact potential with confidence measure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

An evolutionary trace method defines binding surfaces common to protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

The root of the tree of life in the light of the covarion model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and class-specific functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Simplified amino acid alphabets for protein fold recognition and implications for folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Subfunctionalization of duplicated genes as a transition state to neofunctionalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Identification of essential amino acid changes in paired domain evolution using a novel combination of evolutionary analysis and in vitro and in vivo studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

Estimation of amino acid residue substitution rates at local spatial regions and application in protein function inference: a Bayesian Monte Carlo approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL056

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSL056

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17 April 2018

PubMed ID

16864604

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17 April 2018